Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00486 ATGGCCAGAAACCCCATCTTCTCCCGTCGCCGGAGGTCCGATCAGCTTGACGCTTTAGATCGTTTTCCCACCTCTGATTCTGAAGTCCATGTTCTCGCCGTCGATGACAGCCTCGTCGACCGTACAGTAATTGAACGCCTCCTTCGTCTTACTGCCTGTCGAGTTACTGCAGTTGATAGTGGAATTAGAGCTTTACAATATCTTGGATTGCAAGATGAGACTAATTCCCAAGTTGGGTTTGATGGGTTGAAGGTTGATATGATCATAACAGATTACTGTATGCCCGGAATGACAGGATACGAATTGCTTAAGAAAATTAAGGAATCATCAACTTTGAGAGAGATTCCGGTGGTAATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTGGAGGAAGGAGCGGAGGATTTCATAGTGAAGCCGGTGAAATTATCTGACGTGAAACGGCTCAGGGAATATATGGTGGGGGATGAAAAGACCGGAAATGAAAGAAGTGGGATCAATAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCATCATCACCGTCCATTTCATCACCAGCATCATCGGATTCCTCTCCATCATGTCCATCACCTTCATCATCACCGTCAGATTCGCTTCAGTCCACCCCATCATCATCAGAACCGTCATCTCCAATGTCCACTCCACAATCGGACGGTTCTAAATGA 702 46.58 MARNPIFSRRRRSDQLDALDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGNERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSPSSSPSDSLQSTPSSSEPSSPMSTPQSDGSK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3124244 3125939 - MELO3C012031.2.1 Cme10g00486 339372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00486 233 MobiDBLite consensus disorder prediction 162 179 - -
Cme10g00486 233 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Cme10g00486 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 12 223 - -
Cme10g00486 233 SUPERFAMILY CheY-like 29 155 IPR011006 -
Cme10g00486 233 SMART REC_2 29 154 IPR001789 GO:0000160
Cme10g00486 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 223 IPR045279 GO:0009736
Cme10g00486 233 CDD REC_typeA_ARR 31 153 - -
Cme10g00486 233 Gene3D - 29 186 - -
Cme10g00486 233 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Cme10g00486 233 MobiDBLite consensus disorder prediction 180 233 - -
Cme10g00486 233 MobiDBLite consensus disorder prediction 162 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00026 Cme-Chr10:275521 Cme10g00486 Cme-Chr10:3124244 1.94E-40 dispersed
Cme10g00486 Cme-Chr10:3124244 Cme10g01256 Cme-Chr10:13333518 1.15E-14 dispersed
Cme03g00540 Cme-Chr3:8082730 Cme10g00486 Cme-Chr10:3124244 4.06E-46 transposed
Cme04g00880 Cme-Chr4:11519371 Cme10g00486 Cme-Chr10:3124244 5.24E-12 transposed
Cme04g02093 Cme-Chr4:28296386 Cme10g00486 Cme-Chr10:3124244 4.48E-48 transposed
Cme08g01358 Cme-Chr8:10713711 Cme10g00486 Cme-Chr10:3124244 1.03E-52 transposed
Cme09g01191 Cme-Chr9:16670479 Cme10g00486 Cme-Chr10:3124244 6.21E-56 transposed
Cme10g00486 Cme-Chr10:3124244 Cme02g01933 Cme-Chr2:25679801 1.23E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42056 PF00072 Response_reg 2.10E-21 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00486 K14492 - csv:101209506 369.007