Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00490 ATGGGCACGAGGAGAAACTGTTTCATCAATGGAGTACAAATAGAAGATTGTTTCGGTTTTACTACAACGTCTTCTTCTTCCTTACCCATAATGGAGTTTTTGTACATATTATTTTTCATCTCCATTTTTCTTCCTTTAAGCTTTTCTCTCAACCTTGAATCTCCCGATCTCAATGAAACCACCTCCATTTCCCTTCATACCAATCATACTTCTTCACTCAGACACCAAATTCTCGACCTCGCCAATCATCCCACCACTGTAAATTGGATGAAGACCATAAGGAGAAAAATTCACGAGAACCCAGAACTTGCTTTTGAAGAATTTGAAACCAGTAGGCTTATTAGACAGGAGCTTGACAATCTCCGTGTTTCTTATCGATGGCCGGTCGCCGGTACCGGCGTTGTGGCTTTCGTTGGCTCTGGTTCTCCTCCCTTTGTCGCTCTAAGAGCTGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAACATAAGAGCAAAGTTGAGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTCCTTGGTGCTACTAAGATTCTGAATCAACTGCGACATAAATTACAGGGCACTGTTGTTCTTGTATTTCAGCCAGCGGAGGAGAAAGGAGGAGGAGCAAAAGACATGATAAATGAAGGTGCGCTTGATGGTGTAGAAGCTATATTTGGACTGCACGTCGTGCATAAATATCCAGTGGGCGTTGTCGCTTCACGCCCTGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCAGCAATTCCACAGGATTCAATTGATCCTATTTTAGCAGCTTCGGCAGCAATTATAAGTTTGCAAAGCATAGTTTCAAGAGAGATCGACCCTTTAGATTCTCAGGTGGTTTCTGTGGCCATGGTTCAAGCAGGAACTGCACTCAATGTCATCCCGGAGTCCGCAACTATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTTAATGCTCTAAGAGACAGGATAGAAGAGGTCATTAATGGGCAGGCTGTGGTGCATCGGTGCACGGCGGAGATTGATTTTCTAGGCAAGGAATACCCAACAATTCCTCCAATGATAAATGACGAGAAAATATATGAACATGTTCGACACAAAGTGCCAGGATCTTTCTTATTTCTTGGCACATATAACGAGAGAATCGGAGCTATACATCCTCCACACAGCCCTCATTATAAAATTGATGAAAATGTGCTTCCAATTGGCGCAGCAATTCATGCAGCAGTGGCATATTCGTATCTCTTGAATTCATCATCAACATCCCATTCTTTCTTTGACCACTGA 1353 43.53 MGTRRNCFINGVQIEDCFGFTTTSSSSLPIMEFLYILFFISIFLPLSFSLNLESPDLNETTSISLHTNHTSSLRHQILDLANHPTTVNWMKTIRRKIHENPELAFEEFETSRLIRQELDNLRVSYRWPVAGTGVVAFVGSGSPPFVALRADMDALPIEELVEWEHKSKVEGKMHACSHDAHVAMLLGATKILNQLRHKLQGTVVLVFQPAEEKGGGAKDMINEGALDGVEAIFGLHVVHKYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAAIPQDSIDPILAASAAIISLQSIVSREIDPLDSQVVSVAMVQAGTALNVIPESATIAGTFRAFSKKSFNALRDRIEEVINGQAVVHRCTAEIDFLGKEYPTIPPMINDEKIYEHVRHKVPGSFLFLGTYNERIGAIHPPHSPHYKIDENVLPIGAAIHAAVAYSYLLNSSSTSHSFFDH 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3157118 3159667 + MELO3C012027.2.1 Cme10g00490 339376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00490 450 SUPERFAMILY Bacterial exopeptidase dimerisation domain 255 374 IPR036264 -
Cme10g00490 450 Gene3D - 255 373 - -
Cme10g00490 450 Gene3D Zn peptidases 92 387 - -
Cme10g00490 450 Pfam Peptidase family M20/M25/M40 147 432 IPR002933 GO:0016787
Cme10g00490 450 SUPERFAMILY Zn-dependent exopeptidases 86 439 - -
Cme10g00490 450 PANTHER PEPTIDASE M20 FAMILY MEMBER 62 387 IPR017439 GO:0016787
Cme10g00490 450 PANTHER PEPTIDASE M20 FAMILY MEMBER 389 443 IPR017439 GO:0016787
Cme10g00490 450 Pfam Peptidase dimerisation domain 256 354 IPR011650 -
Cme10g00490 450 CDD M20_IAA_Hyd 90 437 IPR044757 GO:0009850|GO:0016787
Cme10g00490 450 TIGRFAM amidohydrolases: amidohydrolase 91 388 IPR017439 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00490 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - csv:101208682 746.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00543 Cme-Chr3:8187305 Cme10g00490 Cme-Chr10:3157118 7.85E-161 dispersed
Cme04g02362 Cme-Chr4:30431161 Cme10g00490 Cme-Chr10:3157118 6.30E-22 dispersed
Cme08g01171 Cme-Chr8:8283057 Cme10g00490 Cme-Chr10:3157118 1.93E-138 dispersed
Cme09g00640 Cme-Chr9:6885124 Cme10g00490 Cme-Chr10:3157118 2.99E-07 dispersed
Cme10g00490 Cme-Chr10:3157118 Cme04g01170 Cme-Chr4:15997331 2.64E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00490 Cme_Chr10 FPKM 77.010384 77.560478 99.00705 97.964111 67.997772 65.48156 77.361862 84.886543 82.477417 97.195572