Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00495 ATGTCCGTATCCATTTCCAACTGCTTCTCTAATTTACTCTGCCAGGAAGATTCTTCCGGAGTCTTCTCCGGCGAGTCACCGGGGTGTTCTAATTCCGACCTCGAGTCTCCAGCCTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGATTGTTTCTCGCGCTTCCAATCTCCGTCGCTTGATGCTGCCGCTAGACTAGACTCTATTGCATGGATTCTTAAGAATCCGTCGGCGATTACTGGTACTGAGTCAGATCCGAGTCGATCGAATCGGAGTCTCCGTACCGGTTCACGACGACGAATCCGTTTGATATATTATGATTATTTATCTCCGTCTCCGTCGCACACGGTTCAAGCATATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTATTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGATGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCATTACTAGATCTTCAGATTGAAGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTATTGGTCCTGAGGGTATTAGATTGGCGGCTACGTTCGGTAACACCGTTCAATTTCATAGCATTCTTTGCCTACAAGCTTGATCCGTCTGGGGATTTCATTGAGTTTCTTATCTCGAGAGCAACAGAGATTATACTGTCACATATCCGAGGATTTGAAAAAATGAAAAATCAAAGTTATGATTGGTCCACAGAGGTAATATTTCTGGAGTACTGGCCATCTTGTATTGCGGCGGCTGCTTTGCTTTGTGCTGCAAATGAAGTCCAGAGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAATGGTCTAAGGAAAGAAAATATCATGGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAATACCCGAAGAAAGTCTCCCAAAATCTTACCTCAGTATAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCTTCTTCCTACTCTTCTTCTTCTTCCTCATCTTCATCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCACTGGGTACATGATGATAAGGGTAATAACACTGAAGAATGA 1179 44.36 MSVSISNCFSNLLCQEDSSGVFSGESPGCSNSDLESPACVEESISVFIKNERHFVPDYDCFSRFQSPSLDAAARLDSIAWILKNPSAITGTESDPSRSNRSLRTGSRRRIRLIYYDYLSPSPSHTVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQIEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFAYKLDPSGDFIEFLISRATEIILSHIRGFEKMKNQSYDWSTEVIFLEYWPSCIAAAALLCAANEVQSLSVVNPEHAESWCNGLRKENIMGCYRLMQEIVLDNTRRKSPKILPQYRVTVRTRMRSSDLSSSYSSSSSSSSSSPNKRRKLNQTHHWVHDDKGNNTEE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3184437 3187893 + MELO3C012023.2.1 Cme10g00495 339381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00495 392 MobiDBLite consensus disorder prediction 352 372 - -
Cme10g00495 392 PANTHER CYCLIN-D1-1 23 83 - -
Cme10g00495 392 Gene3D - 101 209 - -
Cme10g00495 392 SUPERFAMILY Cyclin-like 203 333 IPR036915 -
Cme10g00495 392 MobiDBLite consensus disorder prediction 352 392 - -
Cme10g00495 392 Pfam Cyclin, N-terminal domain 109 215 IPR006671 -
Cme10g00495 392 PANTHER CYCLINS 23 83 IPR039361 -
Cme10g00495 392 SUPERFAMILY Cyclin-like 40 215 IPR036915 -
Cme10g00495 392 PANTHER CYCLINS 125 377 IPR039361 -
Cme10g00495 392 MobiDBLite consensus disorder prediction 378 392 - -
Cme10g00495 392 Gene3D - 210 356 - -
Cme10g00495 392 SMART Cyclin_C_2 218 369 IPR004367 -
Cme10g00495 392 CDD CYCLIN 111 208 IPR013763 -
Cme10g00495 392 SMART cyclin_7 116 209 IPR013763 -
Cme10g00495 392 Pfam Cyclin, C-terminal domain 268 345 IPR004367 -
Cme10g00495 392 PANTHER CYCLIN-D1-1 125 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00737 Cme-Chr8:4915013 Cme10g00495 Cme-Chr10:3184437 1.59E-40 dispersed
Cme09g00668 Cme-Chr9:7328331 Cme10g00495 Cme-Chr10:3184437 3.69E-140 dispersed
Cme10g00495 Cme-Chr10:3184437 Cme07g00288 Cme-Chr7:1864543 2.76E-28 dispersed
Cme10g00495 Cme-Chr10:3184437 Cme03g01823 Cme-Chr3:26613276 5.45E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00495 K18810 - csv:101209417 602.823