Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00496 ATGGCGCCGTACGGTTGCGCTCTGGTCTCGGCCATTGAGGTTTCTCCCGCCAAGATAACAAGCTTCAACGGTCTTCACTATCCAACATTTTCCCTTTTCCCTTCTTTCGTAAAGCCTTTGGTTAATTGTACTTTAACTTCGTCCGTAATTTACAGAGCCACTCCCATCACGGCTAGCTACGTTTACCCAGAACCAATACCGGAATTTGCAGAAGTTGAAACCCAGAAATTTAAGGAGCAGTTATCGAAGAAACTAGCGAAGGATCGCGAGACATTCGGGAACGACTTCGATTCAGTTGTGGATGTTTGCTCGAAGAATTTTGAATTTGCTTTTATTGGGTTGAAGAATATGTCTGGGCGGCTACCTATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTAATAGTAGAGCCTTTCACTAATATGTTTATTGCTCTCAATGAGAGGAAATTACCCGGAGCGCCTTTGGCTGCAAGAACTTCACTCCTATGGGCTCAAAACTATCTGGATAACGATTGGAACATTTGGAACTCAAAAGGAGGATTCGGTTATCTTTGCTCTTGTGTTGAAGATGATGGAGGAAAAAATGTGTGTATCATCACAAAGATACTCCAACACAGTGTCAATTTCATTGATATCTTTGTTGTTGCTATACAAATGGCTTATTAG 681 42.14 MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKNFEFAFIGLKNMSGRLPIFGEYLHVEYGGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFGYLCSCVEDDGGKNVCIITKILQHSVNFIDIFVVAIQMAY 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3192216 3194003 + MELO3C012022.2.1 Cme10g00496 339382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00496 226 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED 123 183 IPR039349 GO:0010468
Cme10g00496 226 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKE 1 109 - -
Cme10g00496 226 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKE 123 183 - -
Cme10g00496 226 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED 1 109 IPR039349 GO:0010468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00496 - - - csv:101211725 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00493 Cme-Chr10:3171568 Cme10g00496 Cme-Chr10:3192216 1.68E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g774 . . . . . . . . Cmo04g01664 . . . . . . . Cpe01g01408 Bhi07g01713 . . Lac13g0232 Hepe10g1668 . . . . . . . . . . . . . Lsi04g00516 Csa05g02363 Chy10g00930 Cme10g00496 . . Bda07g01567 . . . . . . . . Cma04g01591 . Car04g01637 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012764 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00496 Cme_Chr10 FPKM 2.809069 4.635335 4.25882 4.581843 4.117185 5.919428 5.927932 10.184896 11.34285 11.633878