Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00501 ATGGCCATAGCCTTCTCCTTCTCGCCTCTTCTGGATCTACACCGCCATCGCCTTCTTCCACACCATCGAACTTTTCCAACTCTTCCCATTTCTTCATACCCATTTCCCCTTTTCCTCAAGAATCAATCCTTCAAAACTTCATCAGCTCCCCTTCATTCCTCACCCACGACATTGGGCTCTTCGCTTCTCGATGACCCACTTCGGACTGGTCGATTTCTGACCAACGATGAGTTCGAGAAGCTCAAGTTGCTTGGGGATTTTGGGTATTTTCAGGAATTGGAATCTGGGTTCATTTTGGTTCGGGTTATGAGAGATGATGAACTTGATGCCACTGTTGGGTTACTCGCTGAATCATTTGCAGAGTCCATGTTCTGGCCTTCCAGCTATATTTCTTTGCTGAGGTTTTTGGTTAAACAGTATTTGATTGAAAGAAGGGCTCTGATGCCACACACGGCAACACTTATTGGATTTTATAAACGCAAAGATGCTGATGAAGAAGAGGCTGAACAGTTGGCTGGCACAGTGGAGGTTTGCTTTGATAAGAGAGGTGCTAATGCATCTCCCCCCACTCCCACACCTCCTAAGGATTCGCCTTACATATGCAACATGACAGTTCAAAAGGAGCTTCGGAGGAGGGGTATTGGGTGGCATCTTTTGAAGGCCGGTGAGGAATTGATTTCACAAATGAGTACCTCGAGGGAGGTGTACCTGCATTGTAGAATGATTGACACGGCTCCTTTCAACATGTATACAAAAGCTGGCTATAGCGTTGTGCAGACTGATACCATAATTATCTTGTTGATGCTGCAGAGGCGCAAGCACTTGATGCGCAAGAAGCTTCCTGCCATGACCATGGGCAGTTCTTCTGAATCAGATATTTATGGTCATGTTACTAGGCTTATTCATCCTCAAGCTCTTAGATTTGAACAAGAGATATATGTTGATAATATAAAGCAGTTCTGTTTCTGTAATCCACCAAATGAGGTCAACACATGTACCTTGGACCTTGAGAACTATTAG 1020 44.71 MAIAFSFSPLLDLHRHRLLPHHRTFPTLPISSYPFPLFLKNQSFKTSSAPLHSSPTTLGSSLLDDPLRTGRFLTNDEFEKLKLLGDFGYFQELESGFILVRVMRDDELDATVGLLAESFAESMFWPSSYISLLRFLVKQYLIERRALMPHTATLIGFYKRKDADEEEAEQLAGTVEVCFDKRGANASPPTPTPPKDSPYICNMTVQKELRRRGIGWHLLKAGEELISQMSTSREVYLHCRMIDTAPFNMYTKAGYSVVQTDTIIILLMLQRRKHLMRKKLPAMTMGSSSESDIYGHVTRLIHPQALRFEQEIYVDNIKQFCFCNPPNEVNTCTLDLENY 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3215506 3218735 + MELO3C012017.2.1 Cme10g00501 339387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00501 339 CDD NAT_SF 166 238 - -
Cme10g00501 339 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 289 - -
Cme10g00501 339 Pfam Acetyltransferase (GNAT) family 166 255 IPR000182 GO:0016407
Cme10g00501 339 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 98 281 IPR000182 GO:0016407
Cme10g00501 339 Gene3D - 95 281 - -
Cme10g00501 339 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 99 280 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00501 - - - csv:101210740 554.288
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g768 . . . . . Bpe10g00827 . Bma15g00197 Cmo04g01658 . . . . . . . Cpe01g01404 . . . . . . . Cla05g02521 Cam05g2706 Cec05g2739 Cco05g2774 Clacu05g2709 Cmu05g2563 Cre05g2677 Cone13ag1020 . . . Lsi04g00522 Csa05g02359 Chy10g00925 Cme10g00501 . . . . . . . . . . . Cma04g01586 . Car04g01632 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012315 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42058 PF00583 Acetyltransf_1 2.40E-06 CL0257 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00501 Cme_Chr10 FPKM 3.604358 3.874259 13.572882 14.703294 32.770039 37.448982 34.3111 13.404277 13.237575 15.33864