Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00507 ATGTTCCAAGTTTTGATCACAACATCGAAGAGGAAGGCGCATTCATCAGAAGTGGGGAAGGAGGAAGTCCGACACAAGCTCCATCAACATATCTTCAGATCCATACTCTCTTTACTTCCCTTCCCAGATCTCTCCACATACTCCTTCGGATCTCCAATTTCTTCTTCCACAACATTCAAATCGCTGCATATTCTTCCACACCTTTCTTCCTCCTTAATTCCGATCTTCTTCACATCTTTTCAAAGCTTCCACCCTCACTCAATCATGAATCCCTTCTCCTCAGGGACGCGTCTCAGGGATATGATTCGGGCCATTCGCGCCTGTAAAACGGCAGCTGAGGAACGTGCTGTAATTCGAAAAGAGTGTGCTGCTATTCGAGCTGCCATTGATGAGAATGATCATGACTATAGGCATCGAAACCTTGCGAAGCTCATGTTCATTCATATGCTTGGTTATCCCACGCATTTTGGTCAAATGGAATGCTTGAAGTCGATTGCATCTGCTGGCTTCCCAGAAAAGAGAATTGGGTATCTTGGTCTCATGTTACTTCTAGATGAAAGACAAGAAGTTCTGATGTTGGTCACAAACTCATTAAAACAAGATCTCAACCACTCAAACCAGTATATCGTAGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCTGAAATGGCTCGTGATCTTGCACCAGAAGTTGAAAGACTGTTGCAGTTTCGAGATCCAAACATTAGGAAGAAAGCAGCATTGTGTTCAATTAGGATTATAAGGAAAGTACCAGACCTTGCAGAAAATTTTGTTAATCCTGCTGCCTCCTTGCTGAAAGAAAAGCACCATGGGGTTATGATAACAGGAGTTCAACTGTGTACAGAGCTTTGCAAACACAGTCCAGAAGCCCTTGAATATTTTCGGAAGAAGTCAACAGAGGCCATAGTCAAGACACTAAAGGATTTGGTTAATAGTCCATATGCCCCTGAGTATGATATTGCTGGAATAACGGACCCATTTCTCCACATCCGGATGCTTAAATTTTTGCGTGTCTTGGGCCAGGGAGATGCAGATGCTAGCGACTACATGAATGATATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAATGCAGGAAATGCTATTCTATATGAATGTGTTGAAACTATTATGAGTATAGAAGATAGTGGCGGCTTACGTGTACTTGCTATCAATATCTTGGGAAGATTCTTGTCTAATCGCGATAACAATATCAGATATGTAGCATTGAACATGCTTATGAAGGCAATCACAGTAGATGGTCAAGCAGTGCAGAGACATCGGACAACTATCTTGGAATGCGTAAAGGATTCAGATGCTTCAATCCGGAAAAGGGCTCTTGAACTTGTTTACCTTCTTGTGAATGAGAGCAATGTGAAGCCTCTAACCAAAGAGCTCATTGAATACCTGGAAGTTGCTGATCAAGAATTTAAGGGAGATCTTACTGCAAAAATTTGCTCAATTGTTGCAAAGTACTCCCCAGAGAAAATATGGTACATTGATCAGATGCTGAAAGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGGCCTCATTGTCGTGATAAGCAATGCATCTGACCTCCATGGGTATACTGTAAGGGCCTTGTACAAAGCATTTCAGATATCCAATGAGCAGGAAAGCCTTGTTCGAGTGGCAGTTTGGTGCATTGGTGAATATGGTGACATGTTGGTTAATAATATTGGGATGCTTGATATAGAGGATCCCATAGTTGTAACAGAAGCTGATGCTGTGGACATTGTGGAAACTGCTATAAAACGCCATGACTCAGATCTTACCACCAAAGCAATGGCCATGATTGCTTTGCTGAAGCTCTCTTCTCGTTTCCCATCATGTTCTGAGAGGATCAACAATTTAATTGCTCAATATAAAGGAAGCCTTGTGCTTGAGCTGCAGCAAAGATCCATTGAATTCAATTCCATCATTGCAAGTCATCAGAATATGAAGTCTGTGTTGGTTGAAAGAATGCCAGTTTTGGATGAGGCAACGTTCATTGGAAAAAGGGCTGGTAATATTCCAGCATCACTATCGACTTCCAATGGGGCTGCAATTAACCTGCCAAATGGAGTTTCCAAATCTGCCGCCCCTCTCGTCGATTTGCTTGACCTAAGTTCGGATGATGTGCCTGTGCCTAGCTCTTCTGGTAGTGATTTTATTCAGGATCTTCTTGGGCTTGATTTGTCCGCAGCTCCAGAGCAACCTGGAAACAATCTAGCTCCAAAAAGTGGAACTGATGTTCTATTGGATCTTTTGTCTATTGGAACAACACCGCCTGTACAAAGTACTGCATCTGCAACTGACATATTATCCAATCAAGAAAAATCACCTACTTCTCAATTGGATGGACTCTCCTCTCTTTCTCCTCTTCCAGCAAGCAAATTTCCTGCTGCTGTATCACCTACAATAGATTTGTTGGGTGGATTGGCTCCTAACGTGGCTAGCGCAGGTGATGAAAATGGTTCAGTTTATCCATCTATAGTTGCATACGAGAGTGGATCACTGAGAATAACTTTTGACTTCTCTAAGACAGCTGGGAGCCCACAGACAACGTTGATCCACGCCACATTTAAAAATTTATCTCCTAATATCTATTCAAATTTTATTTTCCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCATTTAGATCCGGCTAGCGGTAGTACTTTGCCTGGAAGTGGTAATGGGTCTATCACACAAAAGTTGAGGGTGACTAATAACCAACATGGAAAGAAACATCTTGTGATGCGCCTAAGAATAGCGTACAAGGTGGATGACAAAGATATTTTGGAGGAGGGTCAAAAATGGGGAAAAGGCTCAAGTATGTGTTGCATTAAAGAGATTGGGAGGTTTAATATTGATGTTGAAGCTACCAACTACGATTCTGTTAGCATGACAACTTTCAACACTCAAGACTAA 2982 41.82 MFQVLITTSKRKAHSSEVGKEEVRHKLHQHIFRSILSLLPFPDLSTYSFGSPISSSTTFKSLHILPHLSSSLIPIFFTSFQSFHPHSIMNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECAAIRAAIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFVNPAASLLKEKHHGVMITGVQLCTELCKHSPEALEYFRKKSTEAIVKTLKDLVNSPYAPEYDIAGITDPFLHIRMLKFLRVLGQGDADASDYMNDILAQVATKTESNKNAGNAILYECVETIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDGQAVQRHRTTILECVKDSDASIRKRALELVYLLVNESNVKPLTKELIEYLEVADQEFKGDLTAKICSIVAKYSPEKIWYIDQMLKVLSEAGNFVKDEVWHGLIVVISNASDLHGYTVRALYKAFQISNEQESLVRVAVWCIGEYGDMLVNNIGMLDIEDPIVVTEADAVDIVETAIKRHDSDLTTKAMAMIALLKLSSRFPSCSERINNLIAQYKGSLVLELQQRSIEFNSIIASHQNMKSVLVERMPVLDEATFIGKRAGNIPASLSTSNGAAINLPNGVSKSAAPLVDLLDLSSDDVPVPSSSGSDFIQDLLGLDLSAAPEQPGNNLAPKSGTDVLLDLLSIGTTPPVQSTASATDILSNQEKSPTSQLDGLSSLSPLPASKFPAAVSPTIDLLGGLAPNVASAGDENGSVYPSIVAYESGSLRITFDFSKTAGSPQTTLIHATFKNLSPNIYSNFIFQAAVPKFLQLHLDPASGSTLPGSGNGSITQKLRVTNNQHGKKHLVMRLRIAYKVDDKDILEEGQKWGKGSSMCCIKEIGRFNIDVEATNYDSVSMTTFNTQD 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3255765 3269972 - MELO3C012011.2.1 Cme10g00507 339393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00507 993 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 93 955 - -
Cme10g00507 993 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 93 955 - -
Cme10g00507 993 Gene3D - 81 682 IPR011989 -
Cme10g00507 993 Pfam Adaptin C-terminal domain 846 955 IPR008152 GO:0006886|GO:0016192
Cme10g00507 993 Gene3D - 843 957 - -
Cme10g00507 993 SMART alpha_adaptinc2 840 960 IPR008152 GO:0006886|GO:0016192
Cme10g00507 993 PIRSF AP1_gamma 94 959 IPR017107 GO:0005794|GO:0016192|GO:0030121
Cme10g00507 993 SUPERFAMILY Clathrin adaptor appendage domain 819 955 IPR013041 -
Cme10g00507 993 SUPERFAMILY ARM repeat 113 678 IPR016024 -
Cme10g00507 993 MobiDBLite consensus disorder prediction 780 804 - -
Cme10g00507 993 Pfam Adaptin N terminal region 114 666 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cme10g00507 993 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 843 960 IPR008153 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00507 K12391 AP1G1; AP-1 complex subunit gamma-1 - csv:101212445 1626.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00794 Cme-Chr7:7500686 Cme10g00507 Cme-Chr10:3255765 3.80E-60 dispersed
Cme10g00507 Cme-Chr10:3255765 Cme11g01874 Cme-Chr11:26904760 1.99E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00507 Cme_Chr10 FPKM 10.741506 12.201175 10.971305 11.750324 14.561676 16.217192 14.831886 11.395576 12.662722 12.593884