Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00508 ATGGCATCAAGATCTACCGCTAATTTTTTGGACCTGGCTTCTGGAGATTTACTGGATGTTCCTCGTACACCCAAGTCCCTGCCACGGGTAATGACTGCTCCTGGAATTATTTCTGAATTAGATGATTATGGGAGTAATGACGGAGACTCGGAGTCTTCATCTGTATACCGTGAGCGCAAAATCATAGTTGCAAATATGTTACCTTTGCACGCTAAAAAAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGATGAGGATTCAATTTTATTGCAGCTAAAGAATGGTTTTTCACCTGAGATGGAGGTTATATACATTGGTTCCCTCAAGGTTGAAATCGACCCCAGCGAGCAGGAGGAGGTTGCTCAGAAACTGTTCGACAATTTTAACTGTGTACCTACATTTCTTCCTCATGATCTCCAGAAGAACTTTTATATTGGGTTTTGCAAACAGCAGTTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCATGGTGATCGCTTTGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCGAACAAACTATTTGCTGATAAGGTGATGGAAATCATCAATCCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCTACATTTCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTCCTGCATAGCCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGTTGAACTGTGATTTACTTGGTTTTCATACGTTTGATTATGCCCGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCTTGGATTATGAATCTAAGCGTGGTCATATTGGACTAGATTATTATGGTCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGTCGGCTGGAATCAGTGATGAATCTTCCATCTACATTTGCTAAAGTCAAAGAAATTCGAGATCAGTTCATGGGGAAGAAATTAATTCTTGGTATTGATGATATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTTGCTGTGGAACAGCTTTTACGGCAACATCCTGCGTTGCGAGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCGGGGAAAGATGTGCATGAAGCTCAGAAGGAAGCCTACCTGGCTGCAGAAAGGATCAATGAAGCTTACGGTTCAAGTAACTACAAACCAGTAATTCTGATTGATCGCCCCGTCCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAATCAACTCCTCTCATGGATGAGGCTCTGGGCTTACAAATTGGTTCTCCTAGAACGAGTATGCTTGTGGTGTCTGAATTTATTGGTTGCTCACCTTCTTTAAGTGGAGCAATCAGAGTTAATCCTTGGGACATTGATGCTGTTGCCGATGCATTGGAACTAGCCATAACCATGCAGGAGTCAGAGAAGCAGCTGCGACATGAGAAACATTATCGATATGTCAGTTCCCACGATATTGGATATTGGTCTCGTAGTTTTATGCAAGATTTGGACAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGTTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACTATCGATCACATTGTCTCGGCTTATAAAAGAACTCATAGAAGAGCAATATTTTTAGATTATGATGGCACTATCATTTCACAAAGCTCTATAATTAAGACACCGAGCCCTGAAGTTATCTCAGTCTTGACTACTCTTTGCAATGATCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTCAGTGGTTCGTCTCTTGTGAGATGTTGGGGATTGCAGCGGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACTAGTCCACTGTCTTCTGATCTTGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACGGAAGCAACAGATGGCTCGTGCATAGAACAGAAAGAAAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAATGAACCAGCGGTTGTTAAAAGAGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCAAGAATGGTGGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGTACCGTCTCCAGTCCTTCACTCCCTTCCGCTCCAGAAATCTTTGCCTGTACTGTTGGACGAAAGCCAAGCAAGGCTAAGTTTTACCTCGATGATACTTCCGACGTCGTAAAATTGCTGCAATGCCTTGCCTCGTCATCACGTCCAAGACCCCGACAACTACCACAGATGCGTGTTTCTTTCGAGAGTGTTTTCTAA 2583 42.93 MASRSTANFLDLASGDLLDVPRTPKSLPRVMTAPGIISELDDYGSNDGDSESSSVYRERKIIVANMLPLHAKKDGQSGKWCFSLDEDSILLQLKNGFSPEMEVIYIGSLKVEIDPSEQEEVAQKLFDNFNCVPTFLPHDLQKNFYIGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLLGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVKEIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHPALRGKIVLVQIVNPARGSGKDVHEAQKEAYLAAERINEAYGSSNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQSTPLMDEALGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLDRACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGQWFVSCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIEQKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSRPRPRQLPQMRVSFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3271116 3276812 - MELO3C012010.2.1 Cme10g00508 339394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00508 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Cme10g00508 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Cme10g00508 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Cme10g00508 860 Gene3D - 590 717 IPR023214 -
Cme10g00508 860 Gene3D - 719 848 IPR023214 -
Cme10g00508 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824|GO:0005992
Cme10g00508 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Cme10g00508 860 CDD HAD_TPP 592 833 - -
Cme10g00508 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Cme10g00508 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Cme10g00508 860 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
Cme10g00508 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cme10g00508 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Cme10g00508 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00508 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101212688 1731.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00508 Cme-Chr10:3271116 Cme08g00781 Cme-Chr8:5206986 1.66E-06 dispersed
Cme01g00311 Cme-Chr1:2318897 Cme10g00508 Cme-Chr10:3271116 0 transposed
Cme06g02456 Cme-Chr6:31591146 Cme10g00508 Cme-Chr10:3271116 0 transposed
Cme07g00497 Cme-Chr7:4052377 Cme10g00508 Cme-Chr10:3271116 3.26E-128 transposed
Cme08g00207 Cme-Chr8:1392770 Cme10g00508 Cme-Chr10:3271116 0 transposed
Cme12g01248 Cme-Chr12:20614503 Cme10g00508 Cme-Chr10:3271116 1.32E-131 transposed
Cme10g00508 Cme-Chr10:3271116 Cme02g01956 Cme-Chr2:25829505 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g745 . . . . . Bpe10g00831 Bma14g01784 Bma15g00201 . . . . . . . . Cpe01g01518 . . . . . . . Cla05g02526 Cam05g2715 Cec05g2747 Cco05g2787 Clacu05g2718 Cmu05g2572 Cre05g2685 Cone13ag1029 Cone19ag1019 . . Lsi04g00531 Csa05g02351 Chy10g00918 Cme10g00508 Blo06g00869 Blo11g00904 Bda07g01593 . . . . . . . . Cma04g01714 . Car04g01747 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme07g00497 . 83 618 Trehalose Biosynthesis Gene Families AT1G17000 58.8 5.7e-177 618.2
Cme12g01248 . 93 613 Trehalose Biosynthesis Gene Families AT1G17000 57.0 9.1e-175 610.9
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00508 Cme_Chr10 FPKM 19.07461 18.859669 13.461648 14.72003 12.895104 11.498037 13.784823 4.028663 4.492163 4.361337