Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00511 ATGGCTGCGGAACAATCCGTCGTCGGGTCGGCAGCGAACAAACCCCAGATTGAGAATGGGGTTCCTGCTTCTATTTCCTCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTATCAGGATGTTTTGGTATTTCAGTCATCAACTTATGGGAAGGTTCTGGTTTTGGATGGGGTGATTCAGCTTACTGAGAGAGATGAATGTGCTTATCAAGAGATGATCACTCACCTTCCACTTTGCTCAATTCCAAATCCCAAAAAGGTTCTAGTCATTGGTGGAGGAGATGGCGGTGTCTTGCGAGAGGTGGCTCGACATTCATCCGTTGAGCAGATAGATATCTGTGAAATCGACAAGATGGTAGTTGATGTTTCCAAAGAATTTTTCCCTCGCGTAGCTATTGGGTACGAGGATCCTCGTGTCACTCTTCATGTTGGTGATGGTGTTGCATTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCAATTATAGTGGATTCTTCTGATCCTATCGGGCCTGCACAAGAGCTTTTTGAGAAGCCCTTTTTTGCTTCAGTTGCCAAAGCTCTTCGACCAGGAGGTGTTGTATGTACTCAGGCAGAGAGCATCTGGCTTCACATGCATATCATTGAAGACATTGTAACAAACTGCCGCCAGATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCCACATATCCAAGTGGAGTGATTGGGTTTATGCTCTGCTCAACCGAGGGACCTGATGTCGATTTCAAGCATCCAGTAAACCCAGTCGAGGTGAACGGCATTGACTCCGCAAAGAGTCCGCTCAAGTTTTACAACTCAGAGATTCATGCAGCAGCTTTCTGTTTGCCATCTTTTGCGAAGAAGATTATTGATTCAAAATGA 957 45.45 MAAEQSVVGSAANKPQIENGVPASISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQDVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVSKEFFPRVAIGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPDVDFKHPVNPVEVNGIDSAKSPLKFYNSEIHAAAFCLPSFAKKIIDSK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3310205 3313050 - MELO3C012007.2.1 Cme10g00511 339397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00511 318 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 30 267 IPR030374 -
Cme10g00511 318 PANTHER SPERMIDINE/SPERMINE SYNTHASE 18 318 IPR001045 GO:0003824
Cme10g00511 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 316 IPR029063 -
Cme10g00511 318 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 109 122 IPR030373 -
Cme10g00511 318 PANTHER SPERMIDINE/SPERMINE SYNTHASE-RELATED 18 318 - -
Cme10g00511 318 Pfam Spermidine synthase tetramerisation domain 31 85 IPR035246 -
Cme10g00511 318 Pfam Spermine/spermidine synthase domain 88 275 - -
Cme10g00511 318 Gene3D Vaccinia Virus protein VP39 83 318 IPR029063 -
Cme10g00511 318 Hamap Polyamine aminopropyltransferase [speE]. 31 316 IPR001045 GO:0003824
Cme10g00511 318 TIGRFAM speE: spermidine synthase 32 310 IPR001045 GO:0003824
Cme10g00511 318 PIRSF Spermidine_synth 21 318 IPR030668 GO:0006595
Cme10g00511 318 Gene3D Spermidine synthase, tetramerisation domain 23 82 IPR037163 -
Cme10g00511 318 CDD AdoMet_MTases 108 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00511 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01114 Cme-Chr6:8439241 Cme10g00511 Cme-Chr10:3310205 4.56E-157 dispersed
Cme09g01974 Cme-Chr9:23631657 Cme10g00511 Cme-Chr10:3310205 1.45E-156 dispersed
Cme03g01388 Cme-Chr3:23398077 Cme10g00511 Cme-Chr10:3310205 1.95E-34 transposed
Cme05g02065 Cme-Chr5:28903108 Cme10g00511 Cme-Chr10:3310205 8.81E-32 transposed
Cme06g00617 Cme-Chr6:3948143 Cme10g00511 Cme-Chr10:3310205 9.10E-38 transposed
Cme10g00511 Cme-Chr10:3310205 Cme12g01707 Cme-Chr12:23916762 4.45E-91 wgd
Cme10g00511 Cme-Chr10:3310205 Cme02g01957 Cme-Chr2:25845568 1.60E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00511 Cme_Chr10 FPKM 78.477295 79.260124 99.116302 95.124374 128.410385 135.678909 120.808945 47.102493 50.096123 51.801804