Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00513 ATGGAAGAGGATATTGACGGGGACCTTGCCGACCTAGAAAGCCTTAATTATGAGGATCTGGATAGTGTCTCGAAACTGCAGAAAACACAAAGATACAATGATATTATGCAGAAAGTTGAAGATGCATTGCAGACGGATTCTAATATCTCAAATCAGGGATTTGTATTGGAAGATGATCCTGAGTACCAATTGATTGTAGAGTGTAATGCCTTGTCAGTGGATATTGAGAATGAAATTATTATTATTCACAACTTTATACGTGATAAATATCGACTGAAATTTCCAGAGCTTGAATCACTTGTGCACCATCCAATTGATTACGCTCGAGTTGTTAAGAAGATTGGGAATGAAGTGGATTTGACTCTTGTAGATTTAGAAGGACTTTTACCTTCTGCTGTTATTATGGTTGTTTCTGTCACAGCATCTACCACAAGTGGAAAGCCACTCCCTGAGGAAATTCTCCAGAAAACAATTGATGCATGTGATCGGGCTCTTGCCTTAGATTCAGCAAAGAAAATGGTTCTTACTTTTGTTGAAAGTAGAATGGGGCATATTGCACCAAATCTTTCAGCCATAGTTGGAAGTGCTGTTGCAGCAAAACTAATGGGAACTGCTGGTGGTCTTGTTGCTTTAGCTAAGATGCCTGCTTGCAATGTTCAGCTTCTTGGTGCAAAGAAAAAAAATCTTGCTGGGTTTTCCACAGCTACCTCACAATTTCGAGTAGGTTATATTGAGCAAACAGAGATATTCCAATCGACACCTCCACCTTTGAAGATGCGTGCTTGTCGACTCATATCTGCAAAGTCAACACTTGCAGCACGAGTTGACTCCACCATGGGAGATCCTACTGGGAAGACTGGCAGAGTCTTCAAAGATGAGATCCTTAAAAAAATTGAGAAATGGCAGGAACCTCCACCTGCAAAACAACCAAAACCTCTTCCGGTCCCTGATTCTGAACCTAAAAAGAAGAGAGGTGGCCGTCGATTAAGGAAGATGAAGGAAAGATATGCAACAACGGAGATGAGGAAGCTAGCTAACAGGATGCAGTTTGGGGTGCCTGAAGAGAGTTCTTTAGGAGATGGATTGGGGGAAGGATATGGAATGCTTGGTCAGGCTGGGAGTGGGAAGTTGCGTGTATCAGCTGCTCAGAGCAAGCTTGCTGCAAAAGTTGTTAAGAAGTTCAAGGAAAAACGCTATGGAAGCAGTGGTGCTACGTCTGGGCTGACCTCAAGTTTGGCATTTACTCCCGTACAAGGAATCGAGCTGTCAAATCCTCAGGCTCATTTGAACCAGCTAGGGAGCGGAACACAAAGCACCTACTTTTCTGAAACAGGAACATTTTCAAAAATTAGGAAAAACTGA 1362 42.36 MEEDIDGDLADLESLNYEDLDSVSKLQKTQRYNDIMQKVEDALQTDSNISNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLTFVESRMGHIAPNLSAIVGSAVAAKLMGTAGGLVALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLISAKSTLAARVDSTMGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGSSGATSGLTSSLAFTPVQGIELSNPQAHLNQLGSGTQSTYFSETGTFSKIRKN 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3318313 3321739 + MELO3C012005.2.1 Cme10g00513 339399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00513 453 SUPERFAMILY Nop domain 57 303 IPR036070 -
Cme10g00513 453 SMART NOSIC_2 64 116 IPR012976 -
Cme10g00513 453 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 1 450 - -
Cme10g00513 453 MobiDBLite consensus disorder prediction 299 330 - -
Cme10g00513 453 Gene3D - 22 185 - -
Cme10g00513 453 Pfam snoRNA binding domain, fibrillarin 72 300 IPR002687 -
Cme10g00513 453 Pfam Prp31 C terminal domain 308 425 IPR019175 -
Cme10g00513 453 ProSiteProfiles Nop domain profile. 185 303 IPR002687 -
Cme10g00513 453 Gene3D Nop domain 186 311 IPR042239 -
Cme10g00513 453 PANTHER PRE-MRNA SPLICING FACTOR PRP31 1 450 IPR027105 GO:0000244|GO:0000398|GO:0046540
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00513 K12844 PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31 - csv:101210892 825.469
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01750 Cme-Chr5:26545927 Cme10g00513 Cme-Chr10:3318313 5.20E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g739 . . . . . . Bma14g01786 . . . . Cma18g00806 . Car18g00738 . Cpe09g00498 Cpe01g01522 . . . . . . . Cla05g02530 Cam05g2720 Cec05g2751 Cco05g2792 Clacu05g2722 Cmu05g2576 Cre05g2690 . . . . Lsi04g00536 Csa05g02346 Chy10g00914 Cme10g00513 . Blo11g00906 Bda07g01595 . . . . . . . . Cma04g01721 . Car04g01752 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006442 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00513 Cme_Chr10 FPKM 20.84127 21.176386 8.065087 7.828079 1.628938 1.215426 1.03836 18.126404 16.288691 13.559819