Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00517 ATGGCGGATTCTTCCTCTTCCCCTGCTACTCTCGATTCAAATCCTCAACCTGCCGAACCCGAAAACCCCAATTCCCAGCCCATTAAACCCGAATCTGCTGCTTCTTCTTTCCCTCCACCGCAATCGTTACCACCAACATCGCTTTCTGTAGGAATAAACCCCACCCTGCATCCACCCTTAGTGTCAACGCTGCAACCACCTCTATCTTATGCCCCCTCTCCCTTATCAGGTACGGCGGCCGTTCCTCCGACGGCTCCGTCTTTCCGGCCGGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCTGGTACTGGCATGCTGAACCCAAGCTATTCGAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGTAAGTGGCGGCACGGGAGCAGTTCCAGTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGTGATGAGGCCGTACGCCACTATGCCAAATGGTTTTGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCTTTTCCTCTACCTGGAGTTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGAGGACCTTTTCCTCCACGGCCACCCGGTGCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTATTCCTGGGATTCCGGGTGTTCGCCCAATCATCCCTCCTGTGGTTAGGCCTGCTGTTCTCCCAAGTGTTACACCAGCTGAGAAACCACAAACTACTATTTATATTGGTCGAATTGCACAATCAGTGGATAACGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAGATCCTTCGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGTGCGCTACGATTACTGACAAAGTTAAACATCGATGGACAAGAACTAGGGGGGACATCGCAGTTATGTATTTTGTTTTCTTTGGTCGTTGTATTTCTTCTTCATTTTGACATTCAGATTAAAGCTTCATGGCTAAAGGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAACTCGAAGAAACTGAAAGAAACACAAATTTCGGAGACTAAGGAAGAAGAAGCAGACACAGCAAATGTGGCTAAAAAGGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATCATGATTCAGGGGAAAAAGATTTTGATATTGCCTGTTCTGCAGTCTTAAGTGATGAAGATAGAGATGCGGATCGTGAGGCGAAAGAAAAGATTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGACAACCACTGATGTCTCTGATAATTCAAGTGTGGAACCATCTGCTAAACTCAAAGATGGTGAAGCTGATGGTGATACTTTGAAACCCGATGCAGCCGATGATAGAAATGATGAGGACACTACCAGTGATCATAAACAAGCTAGTGAGCACGACAAGCCTGAAACAAGCTCACCTGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGAGGGATCTGAAAAGGGATAAGGAACGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAAGAAAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTACGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGGGAGAGAGAGAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTACGATGAAGATGACGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCCCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAGGATGATTCATTCGATAGAGAGAAAGAGGAGGAAGAAATTGCAGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACTGAGAGATCCACCGAAACTTCTACCTGGACAGACAACGAGTATCAATGAGAAAACAGTTATCGCTGAAGAATCCACCAATGAGATTAAGGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGGATCTCACAAAATGGTAGTGGTGATGAATTAAATACAATACCATCAGAGACTCGACAGAGTGGAGGGTTGCCTGGCAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAGCGGACTGCTGTTCCTTCAGTTTTTCATGAGGAGGAGGATGATGAAGCACATAAAGAGAAGAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAGCTTCAGGCTGTGCAACCTGCCAGCACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCTGAGTTTGCAAAACGTATATCTAATGCTAATTCCAAAGAAGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTCCTAGTGAAAAGTCAGGTCATCGAGACCGAAATGACGAGGATACCTATCGCAGCAAAGATGAGAACAAGGCAACAGACAGAGATAGGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAGCTTTTGGATGCAAAACAGTTGATTGATATGATTCCGAAGACGAAAGAGGAGTTGTTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATATCAAAAAAGATAACAGAGTTTTTGGGGGAAGAGGAAACGACTCTTGTGGATTACATAGTTTCAAGTACTCAAGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 2988 46.45 MADSSSSPATLDSNPQPAEPENPNSQPIKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTLQPPLSYAPSPLSGTAAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYSNPGVQPPGVSSVAAPAPGMVSGGTGAVPVPVPQPMMAYQVPPGQVPNPVMRPYATMPNGFAAVPTATPQGAFPLPGVPRFPSPYPAMIRGPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEKPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELGGTSQLCILFSLVVVFLLHFDIQIKASWLKGTQATRDYLKRYVEKKAENSKKLKETQISETKEEEADTANVAKKETSKPSAEDSKEDHDSGEKDFDIACSAVLSDEDRDADREAKEKITNALEERLKSRPLPPPPLLTTTDVSDNSSVEPSAKLKDGEADGDTLKPDAADDRNDEDTTSDHKQASEHDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSFDREKEEEEIAEAKRKAEEEQLQKLRDPPKLLPGQTTSINEKTVIAEESTNEIKVMASERESELDSSCDNHIGDGISQNGSGDELNTIPSETRQSGGLPGKRLGFGLVGSGKRTAVPSVFHEEEDDEAHKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKRISNANSKEEKPDSERERGRRPSEKSGHRDRNDEDTYRSKDENKATDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3334131 3340485 - MELO3C012001.2.1 Cme10g00517 339403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00517 995 MobiDBLite consensus disorder prediction 819 874 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 763 783 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 374 573 - -
Cme10g00517 995 SMART rrm1_1 254 327 IPR000504 GO:0003723
Cme10g00517 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 326 IPR000504 GO:0003723
Cme10g00517 995 Coils Coil 532 581 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 1 51 - -
Cme10g00517 995 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 324 - -
Cme10g00517 995 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 352 994 - -
Cme10g00517 995 Gene3D - 237 327 IPR012677 -
Cme10g00517 995 Pfam PWI domain 918 981 IPR002483 GO:0006397
Cme10g00517 995 Coils Coil 585 612 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 699 714 - -
Cme10g00517 995 ProSiteProfiles PWI domain profile. 898 995 IPR002483 GO:0006397
Cme10g00517 995 MobiDBLite consensus disorder prediction 1 32 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 818 874 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 585 672 - -
Cme10g00517 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 324 IPR000504 GO:0003723
Cme10g00517 995 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 324 - -
Cme10g00517 995 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 352 994 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 475 573 - -
Cme10g00517 995 SUPERFAMILY RNA-binding domain, RBD 195 324 IPR035979 GO:0003676
Cme10g00517 995 SMART pwi_2 911 984 IPR002483 GO:0006397
Cme10g00517 995 SUPERFAMILY PWI domain 916 983 IPR036483 GO:0006397
Cme10g00517 995 CDD RRM_RBM25 253 324 IPR034268 -
Cme10g00517 995 MobiDBLite consensus disorder prediction 374 448 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 585 783 - -
Cme10g00517 995 Gene3D PWI domain 874 990 - -
Cme10g00517 995 Coils Coil 642 669 - -
Cme10g00517 995 Coils Coil 368 388 - -
Cme10g00517 995 MobiDBLite consensus disorder prediction 717 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00517 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1169.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00517 Cme_Chr10 FPKM 25.195539 28.069782 69.768517 70.526558 13.084537 13.570701 11.69234 67.481041 61.411522 64.700958