Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00520 ATGGCAGCGATTCTCCCATCCACACCTTCGCAACTCAAATCTCATTACCACTCTATCTCATCCAAATTTTGCCCTTCTTTTTCCCTATCTCTCCGGCAAAGTAACCGGAAGACGATCGGATACTCTCCGGCTTCTTCTCGCATTCGTCTCAGAGTGTTCGCCAATTCGCAATCGGCCCCTGCTTCCGTTGTGACGTCGGAAGTGGCTTCGGTGCCGTCGGAAATGAAGGCGTGGGTTTACGGTGAGTATGGAGGCGTCGATGTTTTGAAATTTGATACCAGTGTATCGGTGCCTGAAGTGAAGGAGGATCAGGTTCTGATTAAGGTCGTTGCGGCGGCGCTTAACCCCGTCGATGGTAAACGGATGCTCGGGAAGTTCAAGGCCACTGATTCTCCTCTTCCGACAGTTCCAGGATATGATGTAGCAGGTGTGGTGGTGAAGGTGGGAAGTCAGGTAAAGGAGCTTAAAGAAGGGGACGAAGTATACGGCAACATCAACGAGAAGGCTCTCGATGGCCCCAAACAGTTCGGTTCTCTTGCAGAGTACACAGCCGTAGAAGAGAAATTGTTAGCCTTAAAACCCAAGAATATTGATTTTATTCAAGCCGCTGGATTGCCTCTTGCCATTGAAACAGCCTATGAAGGCCTTGAAAAAACCAACTTCTCTGCTGGCAAATCAATCCTCGTTCTCAACGGTGCTGGAGGAGTTGGTAGCCTAGTCATTCAGTTAGCAAAAAATGTATTTGGAGCTTCAAAAGTTGCAGCCACTGCTAGCACTGGGAAGTTAGAGTTTTTAAAAAGTTTGGGTGTGGATTTAGCCATTGACTATACCAAGGAGAACATTGAAGATTTACCCGAAAAGTTTGACGTAGTCTACGATGCAATTGGGCAGTGTGATAAGGCAGTGAAGGTAGTGAAAGAAGGTGGCAGCGTCGTAGCGCTGACCGGTGCGGTGACACCACCTGGTTTCAGATTTGTGGTTACTTCAGATGGAGCTGTTCTAAAGAAACTGAACCCCTATCTAGAAAGTGGGAAGGTCAAGCCGATTGTCGACCCAAAAGGACCGTTTCCATTCTCTCAAGTCGTAGAGGCCTTCGCATATGTTGAAAGCAGCCGAGCCACTGGAAAAGTAGTCATACATCCAATCCCATGA 1152 47.92 MAAILPSTPSQLKSHYHSISSKFCPSFSLSLRQSNRKTIGYSPASSRIRLRVFANSQSAPASVVTSEVASVPSEMKAWVYGEYGGVDVLKFDTSVSVPEVKEDQVLIKVVAAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLALKPKNIDFIQAAGLPLAIETAYEGLEKTNFSAGKSILVLNGAGGVGSLVIQLAKNVFGASKVAATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIVDPKGPFPFSQVVEAFAYVESSRATGKVVIHPIP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3355394 3359166 + MELO3C011998.2.1 Cme10g00520 339406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00520 383 Gene3D - 216 330 - -
Cme10g00520 383 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 319 IPR036291 -
Cme10g00520 383 CDD MDR_like_2 75 379 - -
Cme10g00520 383 Pfam Zinc-binding dehydrogenase 268 379 - -
Cme10g00520 383 SUPERFAMILY GroES-like 72 229 IPR011032 -
Cme10g00520 383 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 37 383 IPR044626 GO:0016628
Cme10g00520 383 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 224 245 IPR002364 GO:0008270|GO:0016491
Cme10g00520 383 Gene3D - 82 379 - -
Cme10g00520 383 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 37 383 - -
Cme10g00520 383 SMART PKS_ER_names_mod 84 379 IPR020843 GO:0016491
Cme10g00520 383 Pfam Alcohol dehydrogenase GroES-like domain 103 165 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00520 K18980 EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105] - csv:101215501 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01820 Cme-Chr1:25783548 Cme10g00520 Cme-Chr10:3355394 2.19E-36 dispersed
Cme01g01821 Cme-Chr1:25808755 Cme10g00520 Cme-Chr10:3355394 7.97E-32 dispersed
Cme06g01179 Cme-Chr6:9207447 Cme10g00520 Cme-Chr10:3355394 7.65E-34 dispersed
Cme09g00368 Cme-Chr9:3164111 Cme10g00520 Cme-Chr10:3355394 1.72E-142 dispersed
Cme10g00520 Cme-Chr10:3355394 Cme12g00638 Cme-Chr12:11568656 7.04E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00520 Cme_Chr10 FPKM 0.383985 0.592257 0.0 0.396908 0.411866 0.51109 0.779203 0.259903 0.267001 0.812216