Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00523 ATGTCTTCTTCAAACGATACTTCTTCTCCTTCATCGGATTCTGTTTCAGATTCAAGTTTGCCGCCTGAAGCTTCGGATTCTTCTCCTCCTCCTCCTCATTCTCCTTCTTCTTCTTCTCCTCCTCCTTCACCTTCTACTCCACCGTCACCGGTGCCAGATGGTTATTCATCGTTGACAATTGATCAAGCTAGTCCTCTGCCGTCGATTTTTCAATCCGCAATTAAAGCTCCACCTATTGAAGGTATACTTTCGCCATCTTCCTCACCTCCAGCTCCTCCAAATCCTGGAACTACACCGCCAGCTCCTACTGGCGGTTCCGATTCAAATGATTCCGACGAGAATCCATCGCCACCTCCCGAAGACTCTGCTTCGCCACCGCCGTCTCCTCCGCCGTCACCTCGTCCACCACCGCCTTCGCCACCGCCTTCTCAAGACCCGTCCGTTGATCCTCCACCTTCCCCTGTTCCGACTACAAAAGCATCTCCGGCACCTCCAGGAAGTCCACCTTCTAAAATATCTGAGAAAGATCCCTCTACTCCCGTGGATCAAAGCGCCATTCAGGCTCCTAATACACCCAAGGAGACTCCACCATCTACACCAACGGATCCTCTTCCTCCATCACAAAATCCAGTCGTGATTCCTTCACCAGGTGCAAACCCAGCGACGGGAAAACAAACTCCAAATCCACCTCAAGGAACAATAACTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAGCCACATCCACTCGCACTCCAAACAACTCACCTCATTCCTCTGACTCAACGCCAGTGAAATCATCATTAGGACAATCCAATGCACCATCATCTGGTTTAAGTAGTCACACTGATGTTGCAGTCGGTGCTGCAGTTGCTGGAGTTTTTGCAATCGCTTTGTTTGCTGTGATTTTTATATTCACAAGGAAGAAGAAAAGACGGGTAAAGATGTATACCGGCCCCTACATGCCTCCAAATAACTTCTGTGTGAAAGCAGATGGAAATTACTATCCTCAACAACATGGGGGCAACTCTGGTTCTACTGAAGGCTTCTACACTCAAGTCCCACATACTCCCCTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATACAGTGGCAGTGGAATGGAGTCAGGTGTGATAAACAGTGCCAAGTTTTTCTTTAGCTATGAAGAATTGATGGAGGTTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTATCAGGGTTGGCTTCCAGAAGGGAAGTCTGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGAGAATTCAAGGCGGAAGTTGAGATCATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGTTATTGCGTCTCCGAGCGTCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCACGGTAATGGAGTACCCGTGCTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGATCTGCAAAGGGTTTGGCCTATCTTCATGAAGATTGCCATCCCAGAATTATCCACCGAGACATCAAATCAGCCAACATTTTGCTGGACGACGCTTTTGAGGCGCAGGTTGCAGATTTTGGACTTGCGAAACTGACAAACGATACACATACCCACGTTTCAACTCGGGTCATGGGGACATTTGGATACATGGCTCCCGAGTATGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACAGGTCGTAAGCCTGTTGATCCCACTCAGCCCCTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCTCACCTTCTGCACGCCCTTGAAACTGGGGAGTTTGACGGATTAGTAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCGGCAGCTGCCTGCGTTCGTCATTCGGCTCCTAAAAGGCCTCGCATGATTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAAAGCACCATGTATGATTCTGGGCAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTACAGACAGCTTCGACTACGACAGTTACAGTTCCGGAGAAATAAATGCAAGTCGTGAATCGTGGAGATTCCAAAATATCTCAAGTGGTGAATTAGAAACTCAAGCTTTTAAAGGACGAGCTAGTGCACCACAAAATCACCCTAGCGGTCGACAATTCTAA 2301 47.54 MSSSNDTSSPSSDSVSDSSLPPEASDSSPPPPHSPSSSSPPPSPSTPPSPVPDGYSSLTIDQASPLPSIFQSAIKAPPIEGILSPSSSPPAPPNPGTTPPAPTGGSDSNDSDENPSPPPEDSASPPPSPPPSPRPPPPSPPPSQDPSVDPPPSPVPTTKASPAPPGSPPSKISEKDPSTPVDQSAIQAPNTPKETPPSTPTDPLPPSQNPVVIPSPGANPATGKQTPNPPQGTITTPTSESNILSPPTATSTRTPNNSPHSSDSTPVKSSLGQSNAPSSGLSSHTDVAVGAAVAGVFAIALFAVIFIFTRKKKRRVKMYTGPYMPPNNFCVKADGNYYPQQHGGNSGSTEGFYTQVPHTPLGNSFGSQKGTGYSGSGMESGVINSAKFFFSYEELMEVTSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSERHRLLIYEFVPNKTLEHHLHGNGVPVLDWSKRLKIALGSAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLVDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMIQVVRALDIESDMSDLSNGVKYGQSTMYDSGQYNQDISKFRRMALGTDSFDYDSYSSGEINASRESWRFQNISSGELETQAFKGRASAPQNHPSGRQF 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3371185 3374222 + MELO3C011995.2.1 Cme10g00523 339409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00523 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Cme10g00523 766 Pfam Protein tyrosine and serine/threonine kinase 405 613 IPR001245 GO:0004672|GO:0006468
Cme10g00523 766 MobiDBLite consensus disorder prediction 172 192 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 1 283 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 83 100 - -
Cme10g00523 766 Gene3D Phosphorylase Kinase; domain 1 371 477 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 219 283 - -
Cme10g00523 766 CDD STKc_IRAK 408 676 - -
Cme10g00523 766 Gene3D Transferase(Phosphotransferase) domain 1 478 692 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 52 69 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 118 171 - -
Cme10g00523 766 SMART serkin_6 402 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00523 766 MobiDBLite consensus disorder prediction 101 117 - -
Cme10g00523 766 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 115 739 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 1 23 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 193 213 - -
Cme10g00523 766 MobiDBLite consensus disorder prediction 24 51 - -
Cme10g00523 766 PRINTS Proline rich extensin signature 19 31 - -
Cme10g00523 766 PRINTS Proline rich extensin signature 31 52 - -
Cme10g00523 766 PRINTS Proline rich extensin signature 82 99 - -
Cme10g00523 766 PRINTS Proline rich extensin signature 115 140 - -
Cme10g00523 766 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Cme10g00523 766 SUPERFAMILY Protein kinase-like (PK-like) 382 675 IPR011009 -
Cme10g00523 766 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 115 739 - -
Cme10g00523 766 ProSiteProfiles Protein kinase domain profile. 402 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00901 Cme-Chr4:11902299 Cme10g00523 Cme-Chr10:3371185 4.36E-24 dispersed
Cme04g01192 Cme-Chr4:16312530 Cme10g00523 Cme-Chr10:3371185 1.02E-97 dispersed
Cme07g01715 Cme-Chr7:22658448 Cme10g00523 Cme-Chr10:3371185 1.34E-165 dispersed
Cme10g00313 Cme-Chr10:2046577 Cme10g00523 Cme-Chr10:3371185 1.18E-158 dispersed
Cme10g00523 Cme-Chr10:3371185 Cme11g00187 Cme-Chr11:2262590 8.21E-145 dispersed
Cme11g02117 Cme-Chr11:28760979 Cme10g00523 Cme-Chr10:3371185 4.41E-88 dispersed
Cme10g00523 Cme-Chr10:3371185 Cme09g00179 Cme-Chr9:1371472 3.56E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65197 PF07714 PK_Tyr_Ser-Thr 6.30E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00523 - - csv:101215732 1123.61