Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00524 ATGAGAAGCTTTGAAGGAGCTCTGGAATTTCTTAGGCCTTTAGTGGAGATCAAACTTTGGGATTACTGCATTGTTTGGAAATCAAGAGATGATGATTCTTTGAGGTTTATTGATTGGGTTGGTTGCTGCTGTAGCGGTGGAGTTTCTGATGCCGGTGGGAAGGAGGAAGCCGGAGAGACAATACCAGCTGCGCTTTGTAAGGATACTCGATTTCGACATTTTAGAAGGACAAATGCTTGCCAAGCACTTGCTCAGTTTCCTTCTTCAATATCATTAAACACTGGGGTTCATGGGGATGTTTTGATTTCTAATCAACCCATGTGGCTAACAAGTGGTGAAGCTTCTTATTTTTCGAGTTTTTCACATGAGTTGACTGGGACTCGAGTTCTTATTCCAGTTTCTGGTGGAATTGTGGAGCTTTTTGCTACAAAACGTATGCCAAGAGAGGGAGAGGTTATAGACTTTGTAATGGCTCACTGTAACATCTCTCTGGAGCAAGAATTTGAAACAGAGAGTGCATTATTGGATGCTGGCCTCAATGAGAAGATACTTAGTTCATCTACCAAATACTATTCACTGAACTGGCCTGATCCTCAGCCCTTCCTTGGTTTCAAATCCAAATTAGAAATTCTTCCTTCAGTATCTCAGTCCAGCTCCTTTCCTGGCTGTGGTGAAGGATCATCCAGTGGCTCAAAGCCTTCACCTGGACTTTTCAACCAACCAATTCATACGTCTTTTGAATCGAAAGCGGCGACGCACCGAGAAGAGTTGCTAGAACAACAGAAGAATGTGGTTTCGGATCATTCGAAGATCTTGCAGAAAGATGAAGCCAAAACTGGAGAGAAACAAGAAAAGGAAGTTTACAAATCCAAGAATCTCATGACAGAGAGGAGGAGAAGAAACAAGATTCGTGATCGTCTTTACACTCTACGTGCTTTAGTTCCTAATATATCCAAGATGGATAGAGCATCAATCATTGTGGATGCTATCGGCTATATAAGAGAGTTGGAAGAGAATGTGAAAAGCCTCCAGAATGAACTCATTCAATTGGAGCACAAGGATTGTCAAAAGAACAAACACTTGAAGATTTCTCCATTAGAGAAGACAAACGATGACATTAATAGTTGGTCTTTCGTTCAGGATGATCAACCTATGTTTATCCTCAATGAGGAGAAGCCTATGGAGGTGGAAGTCGAAGTGATGCGAATTAATGAAAGAGATTTCTTAATCAAGCTATTCTGCAAGCGGAAACAAGGCGGCGTAGTGAGCTCGATTGAGGCGATGTATTCATTAGGCTTGCAGGTTATTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTCAACATTTTCCATGTTGAGGCTAATGAAAATGACATTCAACCAAAGAGATTGAGAGACTCTCTGATGAAGCTAACAAGCTGA 1425 41.54 MRSFEGALEFLRPLVEIKLWDYCIVWKSRDDDSLRFIDWVGCCCSGGVSDAGGKEEAGETIPAALCKDTRFRHFRRTNACQALAQFPSSISLNTGVHGDVLISNQPMWLTSGEASYFSSFSHELTGTRVLIPVSGGIVELFATKRMPREGEVIDFVMAHCNISLEQEFETESALLDAGLNEKILSSSTKYYSLNWPDPQPFLGFKSKLEILPSVSQSSSFPGCGEGSSSGSKPSPGLFNQPIHTSFESKAATHREELLEQQKNVVSDHSKILQKDEAKTGEKQEKEVYKSKNLMTERRRRNKIRDRLYTLRALVPNISKMDRASIIVDAIGYIRELEENVKSLQNELIQLEHKDCQKNKHLKISPLEKTNDDINSWSFVQDDQPMFILNEEKPMEVEVEVMRINERDFLIKLFCKRKQGGVVSSIEAMYSLGLQVIDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLMKLTS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3374659 3377528 - MELO3C011994.2.1 Cme10g00524 339410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00524 474 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 474 - -
Cme10g00524 474 Coils Coil 326 353 - -
Cme10g00524 474 CDD ACT_UUR-ACR-like 409 469 - -
Cme10g00524 474 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 156 IPR025610 -
Cme10g00524 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Cme10g00524 474 Gene3D - 278 354 IPR036638 GO:0046983
Cme10g00524 474 Pfam Helix-loop-helix DNA-binding domain 290 337 IPR011598 GO:0046983
Cme10g00524 474 PANTHER TRANSCRIPTION FACTOR BHLH90 61 474 - -
Cme10g00524 474 MobiDBLite consensus disorder prediction 262 283 - -
Cme10g00524 474 MobiDBLite consensus disorder prediction 219 242 - -
Cme10g00524 474 SMART finulus 293 342 IPR011598 GO:0046983
Cme10g00524 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 352 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00524 - - - csv:101215974 860.522
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01277 Cme-Chr5:20931824 Cme10g00524 Cme-Chr10:3374659 9.92E-17 dispersed
Cme09g00514 Cme-Chr9:4954618 Cme10g00524 Cme-Chr10:3374659 4.90E-29 dispersed
Cme10g00524 Cme-Chr10:3374659 Cme06g01892 Cme-Chr6:22430202 2.28E-16 dispersed
Cme10g00524 Cme-Chr10:3374659 Cme02g01617 Cme-Chr2:23325650 2.51E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g697 Blo01g00396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02335 . Cme10g00524 . . . . . . . . . . . Cma04g01734 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42059 PF14215 bHLH-MYC_N 2.00E-16 CL0161 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00524 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0