Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00533 ATGGGTTCTGAAGGACCAAGTGGGGTTACAATTCACGTAACTGGATTTAAGAAATTCCATGGGGTTGCTGAAAATCCTACCGAGGCTATTGTCAGTGACTTGAAGGCTTTCGTAGAAGAAAAAGGGTTACCTGCTGGTGTCACTCTTGGAAGTTGCACAGTTCTTGATGCAGCTGGAGATGGTGCTCTTCCAGTGCTCCACAAAGTTCTGGAATCTGGCATCTCAAATGTGACTGAAACCAACAAAGTCGTATGGCTTCATTTGGGGGTAAATAGTGGTTCAACGAGGTTTGCTATTGAATGGCAAGCTGTGAATGAAGCTACTTTCCGTTATGCAGACGAACTTGGATGGCAGCCTCAGAAACTTCCAATAGTCTCCGAGGATGGGGAAATCTCAATGATTAGAAAGACATCCTGCTCGGCTCTGGTGATCTTAGAGAAGTTGAAGGCGAAAAGCTTTAACGTGATATTATCAACGGATGCGGGTCGTTTTGTTTGCAATTATGTATATTACCACTCCCTCAGATTTGCAGAACAGAAGGGTCACAAATCATTGTTTGTCCATGTTCCTCTGTTTTCAAAAATCGACAAAGAAACCCAGATGCGTTTCGTTCACTCACTTTTAGAAGCCATTGCGTCTACATGTTAA 648 43.36 MGSEGPSGVTIHVTGFKKFHGVAENPTEAIVSDLKAFVEEKGLPAGVTLGSCTVLDAAGDGALPVLHKVLESGISNVTETNKVVWLHLGVNSGSTRFAIEWQAVNEATFRYADELGWQPQKLPIVSEDGEISMIRKTSCSALVILEKLKAKSFNVILSTDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDKETQMRFVHSLLEAIASTC 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3417591 3420477 - MELO3C011984.2.1 Cme10g00533 339419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00533 215 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 1 215 IPR016125 -
Cme10g00533 215 CDD Peptidase_C15 9 213 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cme10g00533 215 ProSitePatterns Pyrrolidone-carboxylate peptidase cysteine active site. 153 167 IPR033694 -
Cme10g00533 215 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 10 212 IPR036440 -
Cme10g00533 215 PIRSF Pyrrolidone-crbxlat_pptds 8 215 IPR000816 GO:0005829|GO:0006508|GO:0016920
Cme10g00533 215 Gene3D - 9 215 IPR036440 -
Cme10g00533 215 Pfam Pyroglutamyl peptidase 11 194 IPR016125 -
Cme10g00533 215 PANTHER BNAA09G31040D PROTEIN 1 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00533 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] - csv:105435561 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00025 Cme-Chr2:265243 Cme10g00533 Cme-Chr10:3417591 4.71E-102 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g674 . . . Bda11g01272 Bpe13g01469 Bpe10g00842 . Bma15g00181 . Cmo18g00794 . Cma18g00792 . . . Cpe09g00510 Cpe01g01540 . . . . . . . Cla05g02551 Cam05g2739 . Cco05g2811 . Cmu05g2593 Cre05g2708 Cone13ag1049 Cone19ag1039 . . Lsi04g00559 Csa05g02327 . Cme10g00533 Blo06g00881 . . Bda11g01272 . . . Bma06g00616 . . . . . Car04g01774 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002246 3 3 2 4 3 1 1 1 1 1 2 1 2 2 2 3 1 5 3 1 2 2 2 2 2 1 2 4 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00533 Cme_Chr10 FPKM 0.473225 0.0 1.029507 0.510266 3.345543 1.671101 2.295061 1.695392 1.288185 1.366747