Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00536 ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCAGAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATGGATAAGTCTGAAATCGTCTAA 231 42.42 MKLENQTQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV 76
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3421588 3422456 + MELO3C034128.2.1 Cme10g00536 339422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00536 76 Pfam RNA polymerases N / 8 kDa subunit 16 64 IPR000268 GO:0003677|GO:0003899|GO:0006351
Cme10g00536 76 SUPERFAMILY RNA polymerase subunit RPB10 16 68 IPR023580 -
Cme10g00536 76 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER 15 74 IPR000268 GO:0003677|GO:0003899|GO:0006351
Cme10g00536 76 Gene3D - 14 72 - -
Cme10g00536 76 PANTHER - 15 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00536 K03007 RPABC5, RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 - csv:101211391 124.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01207 Cme-Chr3:21590352 Cme10g00536 Cme-Chr10:3421588 6.22E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g671 . . . . . Bpe10g00844 Bma14g01802 Bma15g00179 . . . . . . Sed07g2568 . . Bhi07g01744 Tan04g0166 Cmetu10g0943 Lac13g0190 Hepe10g0024 . . Cla05g02552 Cam05g2740 Cec05g2772 Cco05g2812 Clacu05g2741 . . . . . . Lsi04g00560 Csa05g02326 Chy10g00893 Cme10g00536 Blo06g00883 . Bda07g01611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001943 3 3 1 3 3 2 1 3 3 3 3 2 1 2 2 2 1 1 2 1 2 1 3 0 2 3 2 2 3 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00536 Cme_Chr10 FPKM 17.759357 17.192003 10.48747 10.063746 8.608717 9.895024 9.985743 9.274218 8.72168 7.95335