Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00538 ATGAACCATTTTTTCCTATGTTTCATGGGTATTTTGGAGTTGGTGTGGTTCCCTCCAAGAATAAATGCCGAGCGACGAAAATATCTTAGAAGGTTAGTGGTAAGCTCTGCCTTATCCATCTTCTCCAACGAGAGGAAAGGGAAGAAGAAGGAAAGGAGCGTAACAATGGCGACAATCCCATCATTGCCAGGCTTAACCCTATTCTCTTCACTCCCTTCAGCTCCACCGCCTCACGAACCCTCACCCACTTCTTCTCCTTCAACCCCAATTCCAATTCCCAAATACCCTCCTCCCAAATCCCGCACTCTTCGAACCAACAACCCTCCAAAATCACCTAATCCTGCTCTCAAGACTTTCCACCGCCGTTCCAAGTACTACAAGCCCGTCAAAGATGGCGTCATCTCATCCAACGGCGAACGCGCTGTCGTCATCGGCGATTCCGGTGTCTCCTATCTTCTCCCCGGTGCTCCATTCGAGTTCCAATACAGTTACTCCGAGACCCCCAATGTCAAACCCATTGCAATTCGTGAACCGGCGTTTCTACCCTTTGCACCTCCGACGATGCCGAGGCCTTGGACGGGGAAAGCTCCATTGAAAAGCTCGAAGAAGAAAATCCCACTTTTTGATTCCTTCAATCCGCCCCCGCCTGGTACTAAAGGAGTTAAACAAGTCCAATTGCCTGGCCCGTTCCCGCTTGGGCAGTATCCCAAGGAGGGGAAAAGCAGAGAGGAGATACTTGGGGAGCCACTCAAGAATTGGGAGATTCGCATGCTGGTGAAACCCCATTTATCACATAATAGACAGGTTAATCTTGGAAGGGATGGACTTACGCATAACATGTTGGAATTGATACATTCACATTGGAAGCGGCAGCGTGTCTGTAAAGTTCGTTGCAAGGGTGTTCCCACAGTAGATATGGATAATATCTGCCATCATATCGAGGAAAAAACAGGTGGAAAAATAATTCATCGAGTCGGTGGTGTATTATATTTGTTCCGAGGTAGAAACTATAATTATCGTACTCGCCCTCAATACCCTGTAATGCTCTGGAAACCTGCAGCCCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGATTAACAAAAGAGGAAGCTAATGAGCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTGGTTGATGACGTAAGGCATGCTTTTGAAGGAAGCATTTTGGTGAAGATCGATTGCACTGGCATGCATGAAAGCGATTATAAAAAGTTGGGTGCTAAACTCAAGGAACTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCGGTTATTTCAGATGATCGTTCTGCTCCACTTCCTTCTCGAGCTAGCTCAAATGATTCTTTGGGTTCGTCTGGTGAGTCTGTTGAGAATAGTGACCTCTTAAATGGCAATCATCATACGATCAAAACTAGCCCGAAAATGAAGCTCCTATGGGAGCGTGCCATAGATTCAAACAAGGCATTGATGCTAGATGAGATTGGTCTTGCTCCTGATGAACTTTTAGAGAGAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAACATTCTTATCCAGCATTTATCACATCAAGTGAAGAAGTCAGCAGTCCAGCTGACAGCCCCGAAAGTCAGGATCACTCTGAAGCCAACTACAACTCCGATGATGATGTAGGTCGTGAAGAAGACCTTTTTGATAATGTTGACCCGTTAGTCCCTTTAGGATCATTACCTGTTGATATTATAGCAAAGAAGCTCAGTTCTGAATAG 1836 44.93 MNHFFLCFMGILELVWFPPRINAERRKYLRRLVVSSALSIFSNERKGKKKERSVTMATIPSLPGLTLFSSLPSAPPPHEPSPTSSPSTPIPIPKYPPPKSRTLRTNNPPKSPNPALKTFHRRSKYYKPVKDGVISSNGERAVVIGDSGVSYLLPGAPFEFQYSYSETPNVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVQLPGPFPLGQYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPSRASSNDSLGSSGESVENSDLLNGNHHTIKTSPKMKLLWERAIDSNKALMLDEIGLAPDELLERVEEFERISQATEHSYPAFITSSEEVSSPADSPESQDHSEANYNSDDDVGREEDLFDNVDPLVPLGSLPVDIIAKKLSSE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3429697 3433807 + MELO3C011982.2.1 Cme10g00538 339424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00538 611 Pfam CRS1 / YhbY (CRM) domain 251 333 IPR001890 GO:0003723
Cme10g00538 611 Pfam CRS1 / YhbY (CRM) domain 368 451 IPR001890 GO:0003723
Cme10g00538 611 MobiDBLite consensus disorder prediction 70 117 - -
Cme10g00538 611 MobiDBLite consensus disorder prediction 553 570 - -
Cme10g00538 611 ProSiteProfiles CRM domain profile. 248 344 IPR001890 GO:0003723
Cme10g00538 611 SUPERFAMILY YhbY-like 368 458 IPR035920 -
Cme10g00538 611 SMART CRS1_YhbY_2 250 333 IPR001890 GO:0003723
Cme10g00538 611 SMART CRS1_YhbY_2 368 451 IPR001890 GO:0003723
Cme10g00538 611 Gene3D - 368 464 IPR035920 -
Cme10g00538 611 MobiDBLite consensus disorder prediction 553 587 - -
Cme10g00538 611 ProSiteProfiles CRM domain profile. 366 462 IPR001890 GO:0003723
Cme10g00538 611 MobiDBLite consensus disorder prediction 466 495 - -
Cme10g00538 611 MobiDBLite consensus disorder prediction 463 495 - -
Cme10g00538 611 SUPERFAMILY YhbY-like 249 342 IPR035920 -
Cme10g00538 611 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 56 610 IPR044599 GO:0000373
Cme10g00538 611 MobiDBLite consensus disorder prediction 73 98 - -
Cme10g00538 611 Gene3D - 249 345 IPR035920 -
Cme10g00538 611 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 56 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00538 - - - cmo:103488994 1187.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01993 Cme-Chr5:28432473 Cme10g00538 Cme-Chr10:3429697 8.93E-155 dispersed
Cme06g00225 Cme-Chr6:1355981 Cme10g00538 Cme-Chr10:3429697 1.24E-91 dispersed
Cme10g00538 Cme-Chr10:3429697 Cme04g01927 Cme-Chr4:26984760 5.69E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00538 Cme_Chr10 FPKM 1.326995 1.119581 7.020358 6.108922 0.0 0.0 0.0 22.668425 24.387617 25.13085