Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00541 ATGGATGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCTTTGATGTCACCCGAGAATCTGATTATTCCACCGGATTATCAGAGCCTTCTAGTCAGTTCTGGAGAGTTTCGCGATCGGATTCCCGTGTTTGGATCCAACGAACTACTTTCAGCTGCAGCATCAGCGATTTCGGAAGCTGAAGCAGCATCGATCACGCCGGATATTCAACGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATCGACTGCCAAAAGAGAGCATTAGCTTTCTCGGCTTTAAATGCTTCCGCAGACACTGTTGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACTTTTGTAACCGTCATGCTGTCACCACGTGCTTAGGTGTCGATCCTGAGCTCGATGAATTCATGGAAACGTATTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAAAGGCCTTTTGATGAAGCAACTACGTTCTTGAATAAGATCGAACTTCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGTCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAAAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACTCTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAAGTAGCATTGGCAGAGAGAACAGGGCTTGATCAAAAGCAAATTAACAATTGGTTCATAAATCAAAGAAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATAATGGTCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 1020 44.12 MDEMYGLQSTAEYSDKALMSPENLIIPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPDIQREEDMVNVIKAKISSHPTYPRLLDAYIDCQKRALAFSALNASADTVGAPPEIAHLLEGIRQESDFCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDNGLSSGRFFRED 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3457746 3465335 + MELO3C011979.2.1 Cme10g00541 339427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00541 339 SMART KNOX1_2 80 138 IPR005540 GO:0003677|GO:0005634
Cme10g00541 339 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 327 - -
Cme10g00541 339 Pfam KNOX1 domain 82 137 IPR005540 GO:0003677|GO:0005634
Cme10g00541 339 SMART HOX_1 256 321 IPR001356 GO:0003677
Cme10g00541 339 ProSitePatterns 'Homeobox' domain signature. 292 315 IPR017970 GO:0000981|GO:0006355
Cme10g00541 339 SUPERFAMILY Homeodomain-like 255 329 IPR009057 -
Cme10g00541 339 Pfam KNOX2 domain 148 194 IPR005541 GO:0003677|GO:0005634
Cme10g00541 339 SMART ELK_2 234 255 IPR005539 GO:0003677
Cme10g00541 339 SMART KNOX2_2 144 195 IPR005541 GO:0003677|GO:0005634
Cme10g00541 339 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 327 - -
Cme10g00541 339 ProSiteProfiles 'Homeobox' domain profile. 254 317 IPR001356 GO:0003677
Cme10g00541 339 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
Cme10g00541 339 Pfam ELK domain 234 255 IPR005539 GO:0003677
Cme10g00541 339 Pfam Homeobox KN domain 274 313 IPR008422 GO:0003677|GO:0006355
Cme10g00541 339 Gene3D - 253 327 - -
Cme10g00541 339 CDD homeodomain 266 318 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00454 Cme-Chr1:3270374 Cme10g00541 Cme-Chr10:3457746 7.35E-68 dispersed
Cme03g02134 Cme-Chr3:28553863 Cme10g00541 Cme-Chr10:3457746 1.05E-39 dispersed
Cme08g00429 Cme-Chr8:2617977 Cme10g00541 Cme-Chr10:3457746 7.49E-68 dispersed
Cme09g01708 Cme-Chr9:21722415 Cme10g00541 Cme-Chr10:3457746 1.35E-25 dispersed
Cme05g01544 Cme-Chr5:24801281 Cme10g00541 Cme-Chr10:3457746 4.63E-75 transposed
Cme07g00247 Cme-Chr7:1603493 Cme10g00541 Cme-Chr10:3457746 4.82E-27 transposed
Cme10g00541 Cme-Chr10:3457746 Cme02g01983 Cme-Chr2:26093307 6.83E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42061 PF03790 KNOX1 8.90E-18 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00541 - - csv:101211876 602.438