Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00543 ATGAAGAAACCCTTCAATTTCCCCTTTCTGTTTCCCTTCCTTCTAATCCTCTCCTTTTTTCGTCTCCCAATCCAATCTTCAGCTGATCCCAGAGCCACTGAGGCGGCGCTAATATGTTCCAACAACACCGCTTCGCCCGCGGAACGATCGACCTTCGTGGCGAATTTTTTGGACTCTATGGATGCTGTTACTCCTCTTATTGCTTCACAGCGATTTGCTGCTGTTATAAATGGGACTGGAAATACGACTGTTTATGCTTTTGGGGAGTGTATGAATGATCTTTCTCAATCGGATTGTGATCTTTGTTTTGCCCAGATGAAAACTCAGATCCTGCGGTGTCTTCCATTTCAGCTTGCTACTCGTGGGGGTAGATTGTTCTATGATGGGTGTTATATTAGGTATGATTATTATAATTTCTTTAACGAGTCTTTGAGTGCCGTGGATAGGACTGTATGCGGGAAATTGGATTATAGTGGGAATCGGAGTGTTTTTAGTGATTCTGCTATGAAATTGGCGAGGAATTTGAGTGCTGTAGCGCCGAAGAATAATGGGTTTGCTGTAGGATTGGTGGATTTTAGGAATGTGTCTGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAGAGGGAGTTCTTGTTCCAAGTGTTTGGTTGATGCAGCTAAGGAGATTGGTTCTTGTCCTCCAAAAAGTGAAGGAAGGGTGTTGAATGCTGGCTGTTACTTCAGATATTCAACTGAAAGGTTTTATTTCAACACCACTGCAACCGCCACCGGAGGAAATAACAGACGTCGTCGTCTGGCGATAATTTTGGCTTCAATATCTGCAGCCGTGGCTGCTGCATTGATTATTTCAACGGTCCTTTTCTGTGCCAGAAGGAGAGTAGTGAGGAAACGCAAAGAGAAAAGGCAACTGGGACCTCTTGTGGCTATTGTTAACAAGTCCAAGCTTAATTTTTCTTATGAAACTCTTGAGAAGGCCACAAATTACTTCGACCAATCCAATAAACTGGGACAAGGAGGTTCCGGTTCAGTCTATAAAGGAACTCTATCAGATGGTAGAGTTGTAGCAATCAAGAGGCTTTTCTTCAATACAAGACAATGGGTTGACCATTTCTTCAATGAAGTAAATCTTATTAGCGGCATCCGACATAAAAATCTTGTAGGGCTGCTTGGATGCAGTATTACGGGCCCTGAAAGCCTTCTTGTTTATGAATACGTGCCCAATCAGAGCTTGCACGATTACCTTTTTGGTAACAAGAACGTCCAGCCACTGAGTTGGGGATCAAGATTTAAGATTGTCTTAGGTACAGCTGAAGGCTTGGCTTATCTTCATGAGGAGTCAAACGTGAAAATCATTCATCGTGACATAAAATTAAGCAATATTCTGCTGGATCATGATTTTACTCCAAAGATTGCTGATTTTGGACTTGCTAGATTGCTTCCTGAAGATAAGACACACATTAGTACTGCAATTGCTGGCACACTAGGTTACATGGCTCCAGAATATGTAGTTCGTGGCAAGTTATCTGAAAAGGCAGACGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTTATCACTGGAAGAAGAAATGGTCACTTCTATCAAGATTCAACGTCCATCTTACAAAGGGTATGGAATCTTTATGGAGAGGGAAGGCTATATGCAGCTGTTGATCCAATCCTTGCGGGTGATTATCCACGAGACGAAGCATCTCGGTTGCTTCAAATAGGTCTAGTTTGTGTGCAAGCCTTTGCTGACCTACGTCCATCCATGTCAATGGTTGTGAAAATGCTTACAGCAAATTATGAGATTCCCCAGCCAAAACAACCTCCATATCTTCATCCTTCTTCAAGTGGAAGCATGAAACCTCAGAATTCTTCAGACTCATCCAATCCCAATTTGTATTACAACTCACGAACCTCTCAAAATAGCATGACCCAAAGCATCATAGACCCTAGATAA 1962 42.25 MKKPFNFPFLFPFLLILSFFRLPIQSSADPRATEAALICSNNTASPAERSTFVANFLDSMDAVTPLIASQRFAAVINGTGNTTVYAFGECMNDLSQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYIRYDYYNFFNESLSAVDRTVCGKLDYSGNRSVFSDSAMKLARNLSAVAPKNNGFAVGLVDFRNVSVYGLGQCWKFVRGSSCSKCLVDAAKEIGSCPPKSEGRVLNAGCYFRYSTERFYFNTTATATGGNNRRRRLAIILASISAAVAAALIISTVLFCARRRVVRKRKEKRQLGPLVAIVNKSKLNFSYETLEKATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWGSRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDHDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNGHFYQDSTSILQRVWNLYGEGRLYAAVDPILAGDYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSSGSMKPQNSSDSSNPNLYYNSRTSQNSMTQSIIDPR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3464745 3469001 - MELO3C011978.2.1 Cme10g00543 339429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00543 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Cme10g00543 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 623 - -
Cme10g00543 653 Gene3D - 33 139 IPR038408 -
Cme10g00543 653 Gene3D - 146 248 IPR038408 -
Cme10g00543 653 Gene3D Transferase(Phosphotransferase) domain 1 406 608 - -
Cme10g00543 653 ProSiteProfiles Protein kinase domain profile. 330 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00543 653 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Cme10g00543 653 Pfam Salt stress response/antifungal 157 245 IPR002902 -
Cme10g00543 653 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Cme10g00543 653 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Cme10g00543 653 SMART serkin_6 330 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00543 653 SUPERFAMILY Protein kinase-like (PK-like) 316 637 IPR011009 -
Cme10g00543 653 Pfam Protein kinase domain 331 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00543 653 ProSiteProfiles Gnk2-homologous domain profile. 145 248 IPR002902 -
Cme10g00543 653 MobiDBLite consensus disorder prediction 613 653 - -
Cme10g00543 653 Gene3D Phosphorylase Kinase; domain 1 290 405 - -
Cme10g00543 653 MobiDBLite consensus disorder prediction 606 653 - -
Cme10g00543 653 CDD STKc_IRAK 336 599 - -
Cme10g00543 653 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 22 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00543 Cme-Chr10:3464745 Cme08g00372 Cme-Chr8:2303496 3.83E-95 dispersed
Cme02g00934 Cme-Chr2:13230987 Cme10g00543 Cme-Chr10:3464745 4.54E-59 transposed
Cme11g01809 Cme-Chr11:26269690 Cme10g00543 Cme-Chr10:3464745 8.28E-11 transposed
Cme10g00543 Cme-Chr10:3464745 Cme03g02231 Cme-Chr3:29095583 9.59E-08 wgd
Cme10g00543 Cme-Chr10:3464745 Cme04g01865 Cme-Chr4:26366240 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65198 PF00069 Pkinase 1.10E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00543 - - cmo:103488990 1236.48