Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00580 ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGCACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTCATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAAGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGCGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAA 417 38.61 MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCRSIE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3728348 3729098 - MELO3C011942.2.1 Cme10g00580 339466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00580 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 137 IPR013083 -
Cme10g00580 138 PANTHER - 1 137 IPR044249 -
Cme10g00580 138 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Cme10g00580 138 PANTHER F21J9.24-RELATED 1 137 - -
Cme10g00580 138 Pfam Ring finger domain 92 135 IPR001841 -
Cme10g00580 138 SUPERFAMILY RING/U-box 92 136 - -
Cme10g00580 138 SMART ring_2 93 134 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00580 K16285 XERICO; RING/U-box domain-containing protein [EC:2.3.2.27] - csv:101214299 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00580 Cme-Chr10:3728348 Cme11g00985 Cme-Chr11:14036352 8.41E-20 dispersed
Cme10g00580 Cme-Chr10:3728348 Cme09g01782 Cme-Chr9:22267005 6.86E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g638 . . . . . . . . . Cmo18g00766 . . . Car18g00696 Sed06g1693 . Cpe01g01571 Bhi07g01794 Tan04g0160 Cmetu10g1376 . Hepe10g1588 . . . . . . . . . . Cone19ag1068 . . Lsi04g00599 . . Cme10g00580 . . . . . . . . . . . Cma04g01774 . Car04g01798 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010996 1 1 0 0 0 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00580 Cme_Chr10 FPKM 8.803596 8.541706 15.867439 15.771495 6.214856 6.078181 6.31714 14.785541 15.637182 17.219368