Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00581 ATGGGAATTCTTTATCGCAGTTCTGTGAATAGAAAGCCAAATGATAGCATGAGGCTTATTATAATAACTTTTATGGGAGTATTTTTGGGCTTTTTGATAGGAATATCTTTTCCAACATTATCACTAACAAAGCTAGGTATCCCCTCCGGTCTTATCCCAAAAATCGATCAGATGTATAATACTGACATAAAAGCAGGCTCATCTACCCAAACATCTCAAAATTTTCCATCTACCAGGACTGGTAGTGGAGACAAGAATAGTTCTCAAAATCGGAATGGTACCTCAGAGATTTGGGTTCCATCAAATCCTAGGGGAGCTGAAAGACTAGCCCCAGGAATTGTTGCAGCTGAGTCAGACTTCTATCTACACAGATTGTGGGGTAATCCCAATGAGGACTTAAATACAAAACCAAATTACCTTGTGACCTTCACTGTCGGTTATAAGCAGAGGGAGAACATTGATAGAGCAGTAAAAAAGTTTTCAGAAAATTTCACAATTCTTCTTTTTCATTACGATGGCCGAACAACAGAATGGGATGAATTTGAATGGTCGAAAAGAGCAATTCACGTCAGTGCTCGAAAGCAAAGTAAATGGTGGTATGCCAAGCGATTTTTGCACCCTGACATTGTGGCACCTTATGACTACATCTTTATGTGGGATGAAGACTTGGGAGTTGAGAACTTCGATGCTGAAGAATATATAAAGTTGGTGAGGAAGCATGGCTTGGAAATATCACAACCTGGTTTGGAACCTACAAGAGGGTTAACATGGCAAATGACAAAGAAAAGGGATGGTCTTGAAGTTCACAAAGATACGGTGGAAAGGGCAGGATGGTGCACTGAGCCGAACTTGCCTCCTTGTGCTGCTTTCGTAGAAATCATGGCTCCAGTTTTCTCACGAGAAGCTTGGCGTTGTGTCTGGTATATGATTCAAAATGATTTAATCCACGGCTGGGGCCTCGATTTTGCCGTTAGAAAATGTGTAGAGCCTGCACACGAGAAGATTGGAGTCGTTGACGCTCAGTGGATCGTTCATCAAGGTCTTCCCTCTCTCGGAAGCCAGGGAGAAACTCAAAATGGGAAAGCGCCATGGCAAGGGGTGAGAGAAAGATGTCGGAAAGAGTGGACAATGTTTCAAAGTCGGTTGGCAAATGCGGAGAAAGCGTATTTCAAGTCAATGGGGATTGATCCTTCAAATTCACCCAAACAGTAG 1212 42.41 MGILYRSSVNRKPNDSMRLIIITFMGVFLGFLIGISFPTLSLTKLGIPSGLIPKIDQMYNTDIKAGSSTQTSQNFPSTRTGSGDKNSSQNRNGTSEIWVPSNPRGAERLAPGIVAAESDFYLHRLWGNPNEDLNTKPNYLVTFTVGYKQRENIDRAVKKFSENFTILLFHYDGRTTEWDEFEWSKRAIHVSARKQSKWWYAKRFLHPDIVAPYDYIFMWDEDLGVENFDAEEYIKLVRKHGLEISQPGLEPTRGLTWQMTKKRDGLEVHKDTVERAGWCTEPNLPPCAAFVEIMAPVFSREAWRCVWYMIQNDLIHGWGLDFAVRKCVEPAHEKIGVVDAQWIVHQGLPSLGSQGETQNGKAPWQGVRERCRKEWTMFQSRLANAEKAYFKSMGIDPSNSPKQ 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3731439 3736156 - MELO3C011941.2.1 Cme10g00581 339467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00581 403 Pfam Protein of unknown function (DUF707) 101 387 IPR007877 -
Cme10g00581 403 PANTHER PROTEIN, PUTATIVE (DUF707)-RELATED 6 400 - -
Cme10g00581 403 PANTHER OS06G0731900 PROTEIN 6 400 IPR007877 -
Cme10g00581 403 MobiDBLite consensus disorder prediction 66 99 - -
Cme10g00581 403 MobiDBLite consensus disorder prediction 66 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00581 - - - csv:101222926 829.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00925 Cme-Chr2:12879216 Cme10g00581 Cme-Chr10:3731439 1.99E-60 transposed
Cme07g01185 Cme-Chr7:16013149 Cme10g00581 Cme-Chr10:3731439 3.55E-06 transposed
Cme09g00438 Cme-Chr9:4194942 Cme10g00581 Cme-Chr10:3731439 0 transposed
Cme10g01721 Cme-Chr10:24069737 Cme10g00581 Cme-Chr10:3731439 4.37E-80 transposed
Cme12g01392 Cme-Chr12:21811418 Cme10g00581 Cme-Chr10:3731439 3.26E-75 transposed
Cme10g00581 Cme-Chr10:3731439 Cme03g02218 Cme-Chr3:29037310 1.03E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g637 Blo01g00832 Blo16g01175 Bda01g01741 Bda11g01291 Bpe13g00510 . Bma14g01823 . . Cmo18g00765 . Cma18g00760 . Car18g00695 Sed06g1694 Cpe09g00537 Cpe01g01572 Bhi07g01795 Tan04g0159 Cmetu10g0724 . Hepe10g0049 . . Cla05g02591 Cam05g2782 Cec05g2818 . Clacu05g2784 Cmu05g2632 Cre05g2748 Cone13ag1081 Cone19ag1069 Cone8ag0694 . Lsi04g00600 Csa05g02283 Chy10g00849 Cme10g00581 . . Bda07g01639 Bda11g01291 . Bpe02g01915 Bma01g00541 . . Cmo04g02803 . Cma04g01775 . Car04g01799 . . . . . . . . . . . . . . . . . . . Chy09g00373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000341 6 5 4 6 6 4 7 3 4 4 4 4 6 3 3 7 4 6 5 4 4 4 4 3 3 3 4 8 3 3 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00581 Cme_Chr10 FPKM 34.552803 36.735638 39.367432 37.695736 35.062992 37.328121 33.146259 30.077324 29.964279 29.481169