Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00583 ATGGAGTCCCATTCCTTAATCATTGCTTTCACCACTTTCCTTGCACTCTCCCTGATTCCTTGTCCTTCCCTCGCCAAACACCCTTGTAATTTTCCGGCGGTGTTCAACTTCGGCGACTCCAACTCCGACACTGGTGGCTTATCTGCTGTCTTTGGTCAAGCGCCACCGCCCAATGGCAGATCCTATTTCCCTGGCCCTGCCGGCCGCTACTCCGATGGCCGCCTTATTGTCGATTTCATAGCGGAAAGCCTTGGGTTGCCATATTTAAGCGCATATCTTGATGCATTGGGAGCGAATTTCAGTCACGGAGCAAATTTCGCGACAGCAGGTTCAACCATTAGACTCCAAAACAGAACTCTTCAGCAGAGTGGATTCAGCCCTATCTCTCTTAATGTTCAGTACAACGAATTCTATGACTTCCGACGTAGATCTCAAACTCTTCGAAATGGACTGGGTGGAATCTTTAAGCAATTATTGCCAAAGGAAGAGAGTTTTAGTCGGGCCCTTTACACATTCGATATTGGGCAAAACGATTTGACGAGTGGTTATTTTGCGAACATGAGTCTCCACCAAGTTAAACTCTATATTCCTGATGTTCTCCAACAATTCTCCGAAATCGTCAAGTGGGTGCATAGTCAAGGAGGAAGATTCTTCTGGATCCATAACACGGGGCCGGTGGGGTGCCTTCCATATGTACTGGACCGCGAGCCCGTTCCAGCGTCGGACTACGACCAATATGGGTGCGCCACTCCTTTCAATGACTTGGCTCAATATTTCAACCGTGGCCTCAAACAAGCCGTCATGGAACTTCGCAAAGCTTTGCCCGACTCTGCCATTACTTATGTTGATGTCTACTCTCTCAAATACGCTCTCGTTTCCCAACACAAGAAATACGGGTTTGAGTATCCATTGAGAACATGCTGTGGACATGGTGGAAAGTACAACTTCAATGTGAAGCTTGGTTGTGGAGGAAAGAAAACGATAAATGGGAAAGAAGTTTTGATTGGAAAATCATGCAAAAACCCAGAGGTTTATGTGAATTGGGATGGTGTTCATTACACTCAAGCAGCTAACAAATGGATCTTCAATCAAATTAAAGATGGTTCTTATTCAGATCCACCTATCCCTTTGAACAAGGCTTGTCACAAAACTTTATCTTAA 1161 45.56 MESHSLIIAFTTFLALSLIPCPSLAKHPCNFPAVFNFGDSNSDTGGLSAVFGQAPPPNGRSYFPGPAGRYSDGRLIVDFIAESLGLPYLSAYLDALGANFSHGANFATAGSTIRLQNRTLQQSGFSPISLNVQYNEFYDFRRRSQTLRNGLGGIFKQLLPKEESFSRALYTFDIGQNDLTSGYFANMSLHQVKLYIPDVLQQFSEIVKWVHSQGGRFFWIHNTGPVGCLPYVLDREPVPASDYDQYGCATPFNDLAQYFNRGLKQAVMELRKALPDSAITYVDVYSLKYALVSQHKKYGFEYPLRTCCGHGGKYNFNVKLGCGGKKTINGKEVLIGKSCKNPEVYVNWDGVHYTQAANKWIFNQIKDGSYSDPPIPLNKACHKTLS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3747539 3751313 - MELO3C011939.2.1 Cme10g00583 339469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00583 386 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 29 383 - -
Cme10g00583 386 Gene3D SGNH hydrolase 23 368 IPR036514 -
Cme10g00583 386 PANTHER BNAA06G32900D PROTEIN 29 383 - -
Cme10g00583 386 CDD SGNH_plant_lipase_like 32 369 IPR035669 -
Cme10g00583 386 SUPERFAMILY SGNH hydrolase 36 366 - -
Cme10g00583 386 Pfam GDSL-like Lipase/Acylhydrolase 34 365 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00583 - - - csv:101202891 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01694 Cme-Chr5:26020331 Cme10g00583 Cme-Chr10:3747539 6.52E-99 dispersed
Cme05g01700 Cme-Chr5:26048929 Cme10g00583 Cme-Chr10:3747539 1.02E-97 dispersed
Cme09g00380 Cme-Chr9:3408610 Cme10g00583 Cme-Chr10:3747539 1.47E-104 dispersed
Cme09g00382 Cme-Chr9:3426383 Cme10g00583 Cme-Chr10:3747539 2.54E-89 dispersed
Cme10g00583 Cme-Chr10:3747539 Cme11g02202 Cme-Chr11:29312907 1.94E-99 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g632 . . . . . . . Bma15g00221 . Cmo18g00764 . Cma18g00759 . Car18g00692 Sed04g0578 Cpe09g00538 . Bhi07g01798 Tan04g0156 Cmetu10g1157 . Hepe10g1584 . . Cla05g02593 Cam05g2784 Cec05g2821 . Clacu05g2786 Cmu05g2634 Cre05g2750 . . . . Lsi04g00602 . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1083 Cone19ag1071 . . . . . Cme10g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00583 Cme_Chr10 FPKM 41.101528 45.514709 43.493603 42.953861 31.234686 37.765682 32.65855 44.875019 45.77586 45.651024