Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00586 ATGGATGAAGAAAAAAAAGGTGGGCTCGCCGGTTGTACTCGGAAAGCGTTTTTTCGGTCGGCGTCTTGGACTGACCGGTCGCCGTCAAAGCCTCATCATAGTCGAAATTTAGTGCCTAATAGTAACAAAGCTCGATCATGTCTACCGCCGCTGCAGCCGCTTTCAATTAGCCGCCGGAATGTTGAGGAGTGGCCACGAGCAGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAATTTGTTAATAAGTCGTCTCAAAGTTCTGAACGTGAAAAACCTGCGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTTTTTGATAAGGAATGCTCGAAGATTCTTGATCATGTGTATTTAGGGAGTGATTCCGTGGCTAAGAATCGACAAGTTTTGAGGCAGAATCGGATTACTCATGTGCTGAACTGTGTTGGGTTTGTCTGTCCTGAGTATTTCAAGGGTGAATTTGTGTACAAAACACTTTGGTTGCAAGATAGTCCCTCTGAGGATATTACTAGTATTCTCTATAATGTGTTTGATTACTTTGAAGATGTTCGTGAACAAGGCGGTCGGGTTTTCGTGCATTGTTGCCAAGGGGTGTCTCGGTCGACTTCTCTTGTAATTGCATACCTCATGTGGAAGGAAGGCCGGAGTTTTCACGACGCTTTTCAATATGTAAAAGCTGCTCGAGGGGTGGCTAATCCAAACTTGGGTTTTGCTTGTCAGTTATTGCAGTGCCAGAAGAGAGTTCATGCAATGCCTGCTAGCCCGAATTCAATTTCGAGGATGTATAGGATGGCTCCACATTCATCATATGATCCGCTTCATCTAGTACCTAAGTTGTTGAACACTCCAACTGTTCAAGGACTTGATTCTCGTGGGGCATTCGTTGTGCACGTTCCTTCAGCAATCTATGTCTGGAAGGGGGAGAAGTGCGACTCTGTGATGTTGAATACGGCAAAGGCAGCAGCGTCGCAGGTTATCCGATATGAGAAGGCAAAGGGCCCCATCCTTAGCATCAAGGAAGGTGAAGAACCGTTAGAGTTTTGGGATGCTCTTGTGAGTGGCCAAAACTCAGCTGATAGTTCTGGAGGAAAAGTTCAAAGATTTGATAGTTCGTATACCACAGAAGATCGCATCTTGAAAATAACAAGTGTGAAGGTGGGTGGAAGGAAGGTTGAGGAGTATGATCCAGATTTTGAGATCTTCCACAGGGCGATTTCAGGTGGGGTCGTTCCACCTTTCGATCGATTCAATACAGAATCAGAGAATTATCTTCCGAGTAGAGAAAATGGGTGGGACTCAACCAAAAGGAAGTTCAAAAATGAAACTGCAAAAGATATTATCACATCTTTGTCAGAATTGGATTGTGACACTAGAGCACCATTTGATGAAATGGATGTGACAGCAAATATTGATGAAGATGCAGAAGTACCTGTTTCTTCAATTGACCTTGCATCTCCACCACTTTCGCCCACAGCCTATTTGTGTGCACCTGAATCTTTTGACCGTTTTCCAAATAGTAGACTGGATCGGAGAATAGAAAATTCTAACGAGGAAAGCTCGATCCCAGACGATTCTTTGTCGTTACCAATTCATCCTTTGGGGTCACCAGATTCATTTTCTTGTTTCCAAGGAGGTACTAGTCCAAAGGTTGGAACCAAATCCCCTTCACTATCTCCCTCTACATCTGATAATTCTAGTTCTTTTACCTTTTCACCGTCATCGTCTAATTGGTCTGACTTATCATATATGTCTTCTCGGCAACCTTCACCATCTGACATGGACTCATTGCATCCGGCTGTTCAAAACTCTTCCATCATAGATAATTTTTGTTTACACCACAAAGAAACACATCCTATCTTTGTAGAGTCCTTTTCCTCTTATCATCCTACATTAAAGCCAGAAAACACCAATTTGACATCAAGAGGAGCCTGCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTAGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAGATAGTTCGATCATCGTCATTTTCTTTACCCGATTTAGACGATGATCTGTTGGAGATATCTGGGTGCAGACTATCCAAAGATAAAAACAGTAGTAAAGTTATGAATTTGGATATTGACAGATTTGGAGCTTGCACTGAATTAGAATGCGATTTTGAGGAAGGAAAGCCTCGGGTATTTTACCAGTGGCCTTCAATGAGTAAAACGGCGATCAATCAACTTAGAGGTCTTAATTCTAGATCAGTGTATATGTTGTTCGATCCAGATCTAAATTTGGATTCAAACGGCGGTAACAAACTATTTATCTGGTTGGGGAGTGAAGTTTTGCATGAAAAAGATGACAGTCAACCGATGAGTGACTACAGTGGTTGTCTCCACTGGGAGATGATCGGACATATATTCATCAACAATAAGGGAATTCCTAGAGATACCCGAATACAGATAATAAGAGAAGGGGAAGAGCCCGAGGAGTTCCTTGCAATTCTAAACCGTTCTTTACCTCAAAAAACGGAAGATGTTGATCTATGGTCTGTGAAAACCTGA 2577 43.03 MDEEKKGGLAGCTRKAFFRSASWTDRSPSKPHHSRNLVPNSNKARSCLPPLQPLSISRRNVEEWPRAGSDDLGVWPNPETPREFVNKSSQSSEREKPAREFQFKKDKLAFFDKECSKILDHVYLGSDSVAKNRQVLRQNRITHVLNCVGFVCPEYFKGEFVYKTLWLQDSPSEDITSILYNVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWKEGRSFHDAFQYVKAARGVANPNLGFACQLLQCQKRVHAMPASPNSISRMYRMAPHSSYDPLHLVPKLLNTPTVQGLDSRGAFVVHVPSAIYVWKGEKCDSVMLNTAKAAASQVIRYEKAKGPILSIKEGEEPLEFWDALVSGQNSADSSGGKVQRFDSSYTTEDRILKITSVKVGGRKVEEYDPDFEIFHRAISGGVVPPFDRFNTESENYLPSRENGWDSTKRKFKNETAKDIITSLSELDCDTRAPFDEMDVTANIDEDAEVPVSSIDLASPPLSPTAYLCAPESFDRFPNSRLDRRIENSNEESSIPDDSLSLPIHPLGSPDSFSCFQGGTSPKVGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSLHPAVQNSSIIDNFCLHHKETHPIFVESFSSYHPTLKPENTNLTSRGACPSIAERRGSHPPPRMLLPSIEEACKVQRKIVRSSSFSLPDLDDDLLEISGCRLSKDKNSSKVMNLDIDRFGACTELECDFEEGKPRVFYQWPSMSKTAINQLRGLNSRSVYMLFDPDLNLDSNGGNKLFIWLGSEVLHEKDDSQPMSDYSGCLHWEMIGHIFINNKGIPRDTRIQIIREGEEPEEFLAILNRSLPQKTEDVDLWSVKT 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3766383 3771813 - MELO3C011936.2.1 Cme10g00586 339472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00586 858 Gene3D Severin 266 366 IPR029006 -
Cme10g00586 858 MobiDBLite consensus disorder prediction 68 99 - -
Cme10g00586 858 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Cme10g00586 858 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 109 256 IPR029021 -
Cme10g00586 858 MobiDBLite consensus disorder prediction 33 48 - -
Cme10g00586 858 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 837 - -
Cme10g00586 858 SUPERFAMILY Actin depolymerizing proteins 261 358 - -
Cme10g00586 858 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Cme10g00586 858 CDD DSP 115 249 - -
Cme10g00586 858 MobiDBLite consensus disorder prediction 547 604 - -
Cme10g00586 858 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
Cme10g00586 858 SMART VILL_6 269 360 IPR007122 GO:0051015
Cme10g00586 858 MobiDBLite consensus disorder prediction 21 51 - -
Cme10g00586 858 Gene3D Protein tyrosine phosphatase superfamily 83 256 IPR029021 -
Cme10g00586 858 PANTHER MKPA PROTEIN 12 837 - -
Cme10g00586 858 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Cme10g00586 858 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00586 - - - csv:101203370 1632.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00586 Cme-Chr10:3766383 Cme10g00858 Cme-Chr10:5788233 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00586 Cme_Chr10 FPKM 10.424701 11.343167 5.103604 5.304778 9.13695 7.86356 7.383688 10.88635 8.707541 9.560901