Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00587 ATGTATCACAGACTTGGCGCAAACCGCCTCGTCTTTCGAGCTAGTATCACCAAGTGCGTCAAGGTTGGTCTAATTGATGAAGCCATACGGATTTTCGATGAGATGACTCAATCCGATTGTCCTGTAACTAGCAGAGACTACAATCGCTTCATTGGTGTTTTGATTAGCCGCTCACGTTTCGATTTGGCGGAAAGCTATTACTCAAGAATGATACCACAGGGTTTTTCTCTTACCCCATTTACTTATTCCAGGTTCATTTCTGCTTTATGTGAAATTAAGAATTTCGGGCTTATTGGAAGGCTTTTGGAAGATATGAAAAAACTTGGATATCTTCCTGACATTTGGGCATTTAATATATATTTGAATCTCTTATTCCGCGAGAACTTGTTAGAATTGGCTCTTGAATTTTATGATGAAATGGTCGCGAAAGGAAGGGAACCTGATGTTGTAACATACACTATAATAGTTGATAGATTGTGCAAAGCCAAACAATATGATAAAGCCGTCGAGTTTTGGCGTTGTATGGTTAACAAGGGGCTTAGTCCAGACATGAAAGCCTGTACAGCTCTCGTTGTTGGGCTCTGTGATGGTGGAAAGGTCGATTTAGCTTATGAGCTTACGGTTGGTGAGATGAAGGGTCAGATGAAGTTCAACAACTTGATTTTTAATTCTTTGATGAGTGGGTTCTGTAAATCTGGCCGGATCTCCAAGGCACTGGCTATCAAATCATTTATGAGTAAACATGGTTGTGAGCCAGATTTGGTTACCTATAATATTTTGCTGAATTTTTTCTGCGATGGGCTGATGTTAGAGTTGGCAGGAAAGTCTATGAAAAAGATGGAGAGGATAGGGATGGAGCCTGATGTGTATAGTTACAATCAACTTCTTAAGGGGCTGTGCAAAGCTAATAGGCTGGATAAGGCATATAAATTGATGAATACAATGTGGGAAAAAGGGCTGTGTGATACTGTTTCATACAATACTGTGATAGGTGCATTATGCAAATCATTGGCAACTAGAAAAGCATACAGGATGTATGAGGAAATGGGCCAGAAAGATGTTGCTCCAGATGTGGGAACATTTGCTACTCTTATAAAAGCATTTCTTATAGAAGGCAGCCCCCATATAGCGAAAAGGCTTCTTCAAAAAATGACACAGACAGTTCTGATACCCGATCTCATATTTTATACAACAGTTGTAGATTACTTTTGTAAGACAGGGAAGATTGAAATGGCCCAAGGTGTCTTTCGTGATATGATAGAGATAGGAATCTCCCCTGACGTGGTTTCATATAATGCGCTTATAAATGGGCTTTGCAAGGCCTCCAAAGTTAGTGAGGCCATGTTACTATATGAGGAAATGCAAATTAGAGGATGCTATCCTGATGAGGTAACTTTCAAACTGATAATTGGAGGTCTTTTACGCGAAAAGAAACTTTCTTTAGCTTGCCAGGTCTGGGATCAGATGATGGAGAAGGGCTATACACTTGACAAATTTGTATCTGAGACTCTCATTAATGCTATTCGGTCAATGGATGCTGGTTAA 1545 39.94 MYHRLGANRLVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMKKLGYLPDIWAFNIYLNLLFRENLLELALEFYDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGKVDLAYELTVGEMKGQMKFNNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLVTYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLCDTVSYNTVIGALCKSLATRKAYRMYEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKRLLQKMTQTVLIPDLIFYTTVVDYFCKTGKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLREKKLSLACQVWDQMMEKGYTLDKFVSETLINAIRSMDAG 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3777455 3782003 + MELO3C034149.2.1 Cme10g00587 339473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Cme10g00587 514 Pfam PPR repeat 396 424 IPR002885 -
Cme10g00587 514 Pfam PPR repeat 16 40 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 429 463 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 116 149 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 19 43 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 290 320 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 150 183 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Cme10g00587 514 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Cme10g00587 514 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 513 - -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Cme10g00587 514 Gene3D Tetratricopeptide repeat domain 103 210 IPR011990 GO:0005515
Cme10g00587 514 Gene3D Tetratricopeptide repeat domain 211 319 IPR011990 GO:0005515
Cme10g00587 514 Gene3D Tetratricopeptide repeat domain 427 513 IPR011990 GO:0005515
Cme10g00587 514 Pfam PPR repeat family 426 473 IPR002885 -
Cme10g00587 514 Pfam PPR repeat family 112 161 IPR002885 -
Cme10g00587 514 Pfam PPR repeat family 221 265 IPR002885 -
Cme10g00587 514 Pfam PPR repeat family 322 368 IPR002885 -
Cme10g00587 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Cme10g00587 514 Pfam PPR repeat 284 315 IPR002885 -
Cme10g00587 514 Gene3D Tetratricopeptide repeat domain 320 426 IPR011990 GO:0005515
Cme10g00587 514 Gene3D Tetratricopeptide repeat domain 2 102 IPR011990 GO:0005515
Cme10g00587 514 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00587 - - - csv:101214780 996.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00587 Cme-Chr10:3777455 Cme01g00035 Cme-Chr1:286648 1.40E-39 dispersed
Cme10g00587 Cme-Chr10:3777455 Cme12g00737 Cme-Chr12:13440985 8.52E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00587 Cme_Chr10 FPKM 3.885423 4.457516 18.5212 17.99032 5.683879 4.768534 5.239111 1.566049 1.760319 1.416698