Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00596 ATGTCTATTACAGCCTTACTTTCACTTCCTCTCTCAAATGCTATAGTTGATTCGTACAATATGCATAGCCTTTCCATTTGTGTCCTTTTTCTTCTTTTTTTCTTATGTTATCTACTCCTTCTAAAAACCAAGAAATATGTTGTACTTAAACACAACAATAACCATAAATTTCTTCCTCCTCCAAGCCCTCCAAAGCTTCCTTTGTTAGGTCATTTACACCTCCTTGGTTCTCACCCTCATCGCTCCTTATGGAACCTTTCGAGAACATACAGCCCCGTTATGCTCCTCAAATTCGGCCCCGTCCCGACTGTCATCATTTCTTCCGCAATGGTTGCAAAAGAGTTGTTCAAACGCCATGATCTTGCTTCATGTAGCCGCCCTCGCTTAGCCGCCACTGCAAAATATTCATACAACTTCTTAGATTTGATTTTTTCCTCTTACGACGATCGTTGGAGGGAGCTTCGTAAGATTTGCATCGCCGAGCTCTTTAGTCCCAAACGTGTGCAATCTTTTCAACATATTAGAGAAGAGGAAGTGAATCAACTTTTGAATGCCATCTCTCAATCCTCATCTTCTTCAACTCTATTTAATTTTACAGCAAAAACGTATTCTCTCACGACTAATATCTTGACTAGGATTGCATTTGGGAAGAGCATTAGAGAGAGTGAAAGTAAACTAGATGATTGTGATGTTGAGAGGGTTATACAAAGAGCGAGCGCAGCGATCGGAAGCTTCTCGGCAAGTGATTTGTTTCCTAGTTTCGGGTGGATTATTGATCGGCTCACCGGTGTTCATGGGCGGCTCGAGAAAAACGTTGAAGAGTTGGATGCTTTTCTGGAACATGTAATTAAGGATCGTATTAACTTTTGGGCGGCTTGTCAAAAAGAAGAAAACATTCTTGATGTTTTGTTGAGAATGGAGAGAGATTGCTATGAATTTGGTTCAATCAAATTCACTCGAGATTGCATTAAAGCAGTTGTCATGGATTTATTTCTAGCTGGAGTGGAAACAGGAGCAAACACACTTGTTTGGACAATGACAGAGCTAGTTAGAAATTCAAAAGTAATGAAGAAGCTACAACGTGAAATCAGAAGCACCATAACTAAACAAGATCAAGTGAAAGAGAACGAGCTTGAAAAGCTTCAGTATCTAAAAATGGTGGTGAAAGAGGCTCTAAGGCTTCATCCACCCCTCCCACTTCTACTTCCAAGAGAAACCATGTCTCATTTCAAACTCAATGGTTACGATATCCATCCAAAAACTCGTATTCATGTGAATGTATTGGCAATCGGAAGAGATGCCAATAGTTGGAAAAATCCACAAGAGTTTTGTCCAGAGAGGTTTATGGAAAGTGACATTGATTATAAAGGACAAAACTTTGAGTTAATTCCATTTGGAGCTGGTAGAAGAATATGTCCGGGTGTGAATATGGGGATGGCAATGGTAGAGTTGGCATTGGCTAATATGTTATTGTGTTTTGATTGGAAATTACCAAATGGAATGAAAGAAGAAGATTTAGATATGGAAGAGGACTTTGGTATTACAGTTTCCAAGAAATCACCTCTTCAACTTATTCCAATTCCTTACTTCAACTCCAATTAA 1602 39.33 MSITALLSLPLSNAIVDSYNMHSLSICVLFLLFFLCYLLLLKTKKYVVLKHNNNHKFLPPPSPPKLPLLGHLHLLGSHPHRSLWNLSRTYSPVMLLKFGPVPTVIISSAMVAKELFKRHDLASCSRPRLAATAKYSYNFLDLIFSSYDDRWRELRKICIAELFSPKRVQSFQHIREEEVNQLLNAISQSSSSSTLFNFTAKTYSLTTNILTRIAFGKSIRESESKLDDCDVERVIQRASAAIGSFSASDLFPSFGWIIDRLTGVHGRLEKNVEELDAFLEHVIKDRINFWAACQKEENILDVLLRMERDCYEFGSIKFTRDCIKAVVMDLFLAGVETGANTLVWTMTELVRNSKVMKKLQREIRSTITKQDQVKENELEKLQYLKMVVKEALRLHPPLPLLLPRETMSHFKLNGYDIHPKTRIHVNVLAIGRDANSWKNPQEFCPERFMESDIDYKGQNFELIPFGAGRRICPGVNMGMAMVELALANMLLCFDWKLPNGMKEEDLDMEEDFGITVSKKSPLQLIPIPYFNSN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3804018 3806248 - MELO3C011929.2.1 Cme10g00596 339482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00596 533 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 Gene3D Cytochrome P450 45 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PANTHER CYTOCHROME P450 71B16-RELATED 28 529 - -
Cme10g00596 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Cme10g00596 533 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 SUPERFAMILY Cytochrome P450 60 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 Pfam Cytochrome P450 60 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme10g00596 533 Coils Coil 356 376 - -
Cme10g00596 533 PANTHER CYTOCHROME P450 71B11-RELATED 28 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00593 Cme-Chr10:3793441 Cme10g00596 Cme-Chr10:3804018 1.38E-24 dispersed
Cme10g00596 Cme-Chr10:3804018 Cme10g00599 Cme-Chr10:3817059 0 dispersed
Cme10g00595 Cme-Chr10:3799636 Cme10g00596 Cme-Chr10:3804018 0 tandem
Cme10g00596 Cme-Chr10:3804018 Cme10g00597 Cme-Chr10:3808996 5.62E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00596 - - csv:101204104 841.262