Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00600 ATGGGAGGAAAGAATTCTAGGGAAGTAGGTCAAAGAGAGTTTGGTTCATATGGGTCTGGCAATTCTTCAACATGGGATCAATACAATTATCCTCCACCATCACCATCACCATATGTTCAACAATATCCATATACAGAACCCTCTGGATATGGCTCACAAACTCCACAACAACCACGGAGAAGGCTTGACAGAAAATATTCAAGAATAGCAGATAATTACCAATCCTTGGATGAGGTGACCGCTGCTCTTGCTAACGCTGGACTTGAGTCATCTAATCTCATTGTAGGAATTGATTTCACGAAAAGCAATGAGTGGACAGGTTCCAGGTCGTTTAATCGACGTAGTTTACACCACATTGGAAATGAGCCGAATCCGTACGAGCAAGCTATATCTATAATAGGGCAAACGTTATCAGCTTTTGATGAGGATAACTTGATTCCGTGTTTTGGATTTGGTGATGCATCAACCCATGATCAAGATGTTTTTAGCTTCTACCATGATGATAGGATATGTAATGGATTTGAGGAAGTCTTGCATCGTTACAGGGAAATTGTTCCCAACTTAAGACTTGCAGGTCCTACATCTTTTGCACCAATAATTGAGATGGCCATGACAATCGTTGAGCAAACTGGTGGTCAGTACCATGTTTTGCTGATAATTGCCGACGGGCAGGTCACAAGAAGTGTTGACACACATAATGGTCAACTGAGTTTACAAGAACGAAAGACAATCGATGCAATTGTAAGGGCGAGTGAGTACCCTTTGTCGATAATCTTCGTTGGTGTTGGAGATGGACCTTGGGATATGATGAAAGAATTTGATGATAATATTCCAGCTCGAGCTTTCGATAATTTTCAGTTCGTCAATTTTACTGAGATAATGTTGAAAAATGTAAACAATGTGAGAAGGCAGACAGAGTTTGCTCTTGCTGCACTGATGGAAATACCTTCTCAATATCAGGCAACTCTAGAGCTTGGCATATTGGGAAGACAAAGAGGTAGTTCACCAGAAAGAGTACCTCTTCCTCCTCCTCTGTACAGTGCAACATCTTCAAGTGGCTACCCGAGAACCCCGTGCTCCAACAGTTTTCAGACCAGAACACCTTCGCTTGGTAGATACAACCAAGGAGTTGGCACAAATCCATCCTCTAGTTCTCCTTATGACAACCAGCTTTGCCCCATTTGTATCACTAATCCAAAAGATATGGCTTTTGGTTGTGGCCATATGACATGTTGCGACTGTGGAGAAAATCTCGAGTTGTGCCCCATATGCCGAAGCTTTATCCAGACTAGAATAAGACTCTATTAA 1308 41.97 MGGKNSREVGQREFGSYGSGNSSTWDQYNYPPPSPSPYVQQYPYTEPSGYGSQTPQQPRRRLDRKYSRIADNYQSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNEPNPYEQAISIIGQTLSAFDEDNLIPCFGFGDASTHDQDVFSFYHDDRICNGFEEVLHRYREIVPNLRLAGPTSFAPIIEMAMTIVEQTGGQYHVLLIIADGQVTRSVDTHNGQLSLQERKTIDAIVRASEYPLSIIFVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMLKNVNNVRRQTEFALAALMEIPSQYQATLELGILGRQRGSSPERVPLPPPLYSATSSSGYPRTPCSNSFQTRTPSLGRYNQGVGTNPSSSSPYDNQLCPICITNPKDMAFGCGHMTCCDCGENLELCPICRSFIQTRIRLY 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3825102 3828779 + MELO3C011925.2.1 Cme10g00600 339486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00600 435 Pfam Zinc finger, C3HC4 type (RING finger) 389 430 - -
Cme10g00600 435 SUPERFAMILY RING/U-box 387 432 - -
Cme10g00600 435 MobiDBLite consensus disorder prediction 1 62 - -
Cme10g00600 435 PANTHER RING-FINGER PROTEIN 1 435 - -
Cme10g00600 435 SMART VWA_4 90 293 IPR002035 -
Cme10g00600 435 MobiDBLite consensus disorder prediction 15 29 - -
Cme10g00600 435 Pfam Copine 115 328 IPR010734 -
Cme10g00600 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 435 IPR013083 -
Cme10g00600 435 PANTHER COPINE FAMILY PROTEIN 1 1 435 - -
Cme10g00600 435 SUPERFAMILY vWA-like 92 274 IPR036465 -
Cme10g00600 435 CDD RING-HC_RGLG_plant 391 435 IPR045317 GO:0061630|GO:0070534
Cme10g00600 435 MobiDBLite consensus disorder prediction 41 57 - -
Cme10g00600 435 ProSiteProfiles Zinc finger RING-type profile. 392 425 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00600 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 818.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02023 Cme-Chr2:26377726 Cme10g00600 Cme-Chr10:3825102 0 dispersed
Cme04g01825 Cme-Chr4:26000523 Cme10g00600 Cme-Chr10:3825102 0 dispersed
Cme08g01016 Cme-Chr8:6612391 Cme10g00600 Cme-Chr10:3825102 7.45E-131 dispersed
Cme10g00600 Cme-Chr10:3825102 Cme11g01654 Cme-Chr11:24374234 9.42E-160 dispersed
Cme10g00600 Cme-Chr10:3825102 Cme09g00441 Cme-Chr9:4220702 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00600 Cme_Chr10 FPKM 33.255444 29.855227 32.095253 33.293415 26.392544 26.314468 24.790773 20.969772 22.322239 19.388453