Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00605 ATGGCGGAAACCGGTGTATATGGGCGGTTTCTAGCGGGGAGTTTAGACCCGAGAGCTCAAGAGTTCCGGCCGAGATATTCGACTACTTTGTTTATGCCGCAACCCCATCGGGTTTTCTTTCAGTACCCAACAATTAGCGACGTTCCTCTCCTGCCGTTTTGCGAGACCGGTGCAACTTACCCGCCGTTTCCAACGGCGGAGTCGGCGTATGTTCCGGTTCGGTCGCCGGTGTCGTCGGTTGCGACTCGGTCGTTGGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGGAGAGAATTGGAAGTATTTGGGGAGATTCGAGGAGTGCAAATGGAGAGAGTTAAAGAAGGGATTGTAATCGTTCATTTCTATGATATTCGCCATGCCGAGAGAGCTTTGCGAGAGATCCGGGATCAGCACATGCACCATCAATGTCGTCTTCGTAACTACTTCAACAATAACAACAACAACAATAACGGTTTCTTGTTATCAAATTCCTCTCTGCCTCGCCCTTCTCCGGCGCCTGGCCTCATCGCCGGCCATGCTGTTTGGGCTCAGTTCATCGTTCCGGCTGGGAAAAATCAGGGCACCATCGTTATCTTCAATCTTGACTCCACCGTTTCCACTTCTTGTCTCAAAGAAATCTTTGAACGTTTTGGTCAAGTGAAGGAGTTGAGAGAGACGCCACTGAAGAAACAACAAAGATTTGTGGAATTTTTCGACATCAGGGACGCCGGAAAAGCTCTTAAGGAGATGAACGGAAAAGAAATCAATGGAAAATCTGTTTTGATTGAGTTTAGTCGTCCTGGGGGCCATGGGAACAAGTTCTTCAATGCTAACTTAACTACTCCGGCCATCTGTGGCTCGAATAATATATACTCCAGGAGTTTAAAATGTCCACCGTCACGACCTCCGCCGCCACCGCCGAGAAGTTTCTCTGGTGGGGTAGGTTCAAATGTTCCGCCGCGGTGGTATTACTCGAAACCCCATACGTCCTCTAGGAAATGGAATCTCAACAAGGGGAGTCGAAGCCCGAGAAACCCTCGGAAGAGCTCGGAGTCCGATGATGTGTATGAAAAAATGGGTTCCGTTGATCTGAATGCCGGCGGTGAGTGTAATGAAATTGAAGAGCGAGAATCATTTGGGGTTTTGAGAAAGAATTCAAAGAACAGCCATAGTAGTTCTTCTGTTGGTGCTGATCAACAACAAGTGCAGCCCAGTAGGAATAAGCTAAGAAAATGTAGACAATCCAGGAAGTTCGATTCTCGATTCTTGATAAACGATAATGATTCCGATTGCAGAGATTCGAGAACTACTGTGATGATCAAGAACATCCCCAACAAATACAGTCAGAAATTGTTATTGAACATGCTGGACAATCATTGTATTCATTGCAACGAGCAAGTGGGCGACGACCATAACGAGCCACTTTCTTCCTACGATTTTGTATATCTCCCCATTGATTTCAACAACAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCAGAGGCTACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAGGTTACTTATGCTAGAGTACAGGGACTGGAATCACTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACTTGCCAGTGGTGTTTTCGCCGCCTCGGGACGGGAGGAAACTGACGGAGCCAATGCCGATTGGAGGGCAGAGACAGTCAATCGCCATTGGCCTCTCAACTACTCCATCTTGTTCTGGGAATGATGAGATGGAGGGTGAAGAAGAAGACGACGATGTTGCAACAACAACAACATTGGTTGATGACCAACAGGAGGAAAGCATGAAAGGAAACAACAACAGTAGCAGTGGAAGCATTGATGAAGACGACACAGACGGTGATGAGTATCATGAAGTTTCTTAA 1962 47.04 MAETGVYGRFLAGSLDPRAQEFRPRYSTTLFMPQPHRVFFQYPTISDVPLLPFCETGATYPPFPTAESAYVPVRSPVSSVATRSLVVSSVPCDVSETMVRRELEVFGEIRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNNNGFLLSNSSLPRPSPAPGLIAGHAVWAQFIVPAGKNQGTIVIFNLDSTVSTSCLKEIFERFGQVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVLIEFSRPGGHGNKFFNANLTTPAICGSNNIYSRSLKCPPSRPPPPPPRSFSGGVGSNVPPRWYYSKPHTSSRKWNLNKGSRSPRNPRKSSESDDVYEKMGSVDLNAGGECNEIEERESFGVLRKNSKNSHSSSSVGADQQQVQPSRNKLRKCRQSRKFDSRFLINDNDSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQVGDDHNEPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRDGRKLTEPMPIGGQRQSIAIGLSTTPSCSGNDEMEGEEEDDDVATTTTLVDDQQEESMKGNNNSSSGSIDEDDTDGDEYHEVS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3871314 3874697 - MELO3C011917.2.1 Cme10g00605 339491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00605 653 MobiDBLite consensus disorder prediction 617 639 - -
Cme10g00605 653 CDD RRM3_EAR1_like 440 541 IPR034458 -
Cme10g00605 653 Gene3D - 194 278 IPR012677 -
Cme10g00605 653 SMART rrm1_1 200 268 IPR000504 GO:0003723
Cme10g00605 653 SMART rrm1_1 84 151 IPR000504 GO:0003723
Cme10g00605 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Cme10g00605 653 MobiDBLite consensus disorder prediction 389 413 - -
Cme10g00605 653 CDD RRM1_EAR1_like 82 150 - -
Cme10g00605 653 Pfam RNA recognition motif 2 440 550 IPR007201 -
Cme10g00605 653 PANTHER RNA BINDING PROTEIN 32 636 - -
Cme10g00605 653 MobiDBLite consensus disorder prediction 389 418 - -
Cme10g00605 653 PANTHER TERMINAL EAR1-LIKE 1 32 636 - -
Cme10g00605 653 MobiDBLite consensus disorder prediction 567 653 - -
Cme10g00605 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Cme10g00605 653 MobiDBLite consensus disorder prediction 333 348 - -
Cme10g00605 653 MobiDBLite consensus disorder prediction 602 616 - -
Cme10g00605 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Cme10g00605 653 SUPERFAMILY RNA-binding domain, RBD 436 538 IPR035979 GO:0003676
Cme10g00605 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 163 - -
Cme10g00605 653 SUPERFAMILY RNA-binding domain, RBD 83 273 IPR035979 GO:0003676
Cme10g00605 653 MobiDBLite consensus disorder prediction 587 601 - -
Cme10g00605 653 MobiDBLite consensus disorder prediction 301 362 - -
Cme10g00605 653 Gene3D - 78 155 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00605 - - - csv:101217639 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00605 Cme-Chr10:3871314 Cme12g01482 Cme-Chr12:22470843 2.22E-07 dispersed
Cme05g00288 Cme-Chr5:2141140 Cme10g00605 Cme-Chr10:3871314 1.75E-27 transposed
Cme07g00882 Cme-Chr7:8849061 Cme10g00605 Cme-Chr10:3871314 3.29E-34 transposed
Cme08g00172 Cme-Chr8:1206841 Cme10g00605 Cme-Chr10:3871314 1.10E-25 transposed
Cme09g00839 Cme-Chr9:11006862 Cme10g00605 Cme-Chr10:3871314 2.44E-34 transposed
Cme11g02368 Cme-Chr11:30664878 Cme10g00605 Cme-Chr10:3871314 1.06E-24 transposed
Cme10g00605 Cme-Chr10:3871314 Cme03g02209 Cme-Chr3:28991383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00605 Cme_Chr10 FPKM 8.370884 9.134882 12.992933 13.052982 8.035365 7.241696 7.526166 9.001937 9.843592 11.781825