Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00610 ATGTGCCGAAAGAGAGCCATATTCAAACCTATGACACCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGCTCCTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAATCATGTTGCCGAAGGGAAAAATCCATGGCAATTGCTGGACCCGGCCACAGCATTGCGGTCACTTCAAAAGGAGCTGTTTACTCTTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACAACTGAAGAGCAATCACCCCCTCGCCTTGTCAGATCTCTGCAAGGAATTCGAATAATTCAAGCAGCAGTAGGGGGTGGGAGGACAATGTTAATCAGCGACGCCGGCCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTTGTTACTACACCAAAGTTGGTTGAATCCCTGAAGGATATATTCGTGGTGCAAGCTGCAATTGGAAATTTCTTTACTGCTATATTATCAAGAGAAGGTACTGTGTACACATTTTCTTGGGGGACTGACAGTAGGCTCGGTCATCATACCGAACCAAATGACTTGGAACCCCGACCCCTGAAAGGAGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTATCTTCTCGCTCTAGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGATGTGGACTGGGTGGAAAGCTTGGTCATGGTTCAAGGACCGATGAGAAACACCCACGACTTATTGAACAATTTCAGCTCCTGAATCTCCAGCCAGTCGTGGTTGCTGCTGGTGCTTGGCATGCAGCTGTTGTAGGTCGTGACGGCCGAGTTTGTACGTGGGGTTGGGGTAGATATGGGTGCCTGGGTCATGGGAATGAGGAATGTGAGTCTTCCCCTAAGGTGGTGGAAGCATTAATCAATGTCAAGGCTGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGTGACGTGTATTCTTTCGGTTGTGGAGAATCAGCTAGTCTCGGGCATAACGTTGTCGTTCCCGAGGAACAGGGGAATCGACAACCGCACGTTTTAAGCCCAGAACTAGTCAGGTCCCTGAAGCAAATTAACGAACGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCATTGACAGAGTCGGGTAAGTTGTATGCATTTGGCGCTGGAGACAAAGGACAGCTCGGGGTTGAACTTGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTAAATTAA 1299 46.81 MCRKRAIFKPMTPEQHQALKQRCGGSWKLVLRFLVAGESCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEQSPPRLVRSLQGIRIIQAAVGGGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVVTTPKLVESLKDIFVVQAAIGNFFTAILSREGTVYTFSWGTDSRLGHHTEPNDLEPRPLKGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALINVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNVVVPEEQGNRQPHVLSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELANQTERGNPERVDIDLN 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3904473 3908196 - MELO3C011912.2.1 Cme10g00610 339496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 62 113 IPR000408 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 114 167 IPR000408 -
Cme10g00610 432 Pfam Regulator of chromosome condensation (RCC1) repeat 167 216 IPR000408 -
Cme10g00610 432 Pfam Regulator of chromosome condensation (RCC1) repeat 226 274 IPR000408 -
Cme10g00610 432 Pfam Regulator of chromosome condensation (RCC1) repeat 277 326 IPR000408 -
Cme10g00610 432 Pfam Regulator of chromosome condensation (RCC1) repeat 329 380 IPR000408 -
Cme10g00610 432 Pfam Regulator of chromosome condensation (RCC1) repeat 61 110 IPR000408 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 329 IPR000408 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 397 IPR000408 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 398 432 IPR000408 -
Cme10g00610 432 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 264 274 IPR000408 -
Cme10g00610 432 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 432 - -
Cme10g00610 432 SUPERFAMILY RCC1/BLIP-II 46 346 IPR009091 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 224 277 IPR000408 -
Cme10g00610 432 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 168 220 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 64 80 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 114 130 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 170 184 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 267 285 IPR000408 -
Cme10g00610 432 PRINTS Chromosome condensation regulator RCC1 signature 325 346 IPR000408 -
Cme10g00610 432 Gene3D - 220 431 IPR009091 -
Cme10g00610 432 Gene3D - 45 219 IPR009091 -
Cme10g00610 432 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00610 - - - csv:101205316 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00403 Cme-Chr7:2638148 Cme10g00610 Cme-Chr10:3904473 7.94E-14 dispersed
Cme09g00152 Cme-Chr9:1157154 Cme10g00610 Cme-Chr10:3904473 2.50E-14 dispersed
Cme10g00610 Cme-Chr10:3904473 Cme05g00190 Cme-Chr5:1320088 2.44E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00610 Cme_Chr10 FPKM 27.078989 27.181482 55.562569 58.022335 96.558167 96.769203 85.746284 121.911308 130.983398 118.341782