Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00618 ATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTCGAAGCTGATATAAGACATGCAAATACATTGGCCGCTATGCTACCGAGAGAATATGGTGGGTTTTGTATTCAGATGAGATTGCATTACAGCCCATTTGCTCCGTTTCTTCTTCATTGGATTGAATGGATGGATTTCAATTGCACAGATCCAGTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTATACGTCGATGGAAAACCGTTGGTGTCGCCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGCTGTAATATACCCTTCACTCAGGCAACTTCAAAGTGGGCGTGTTGATTCAAAAGAAGAGACTTCGCCTAGGAAGATAACAGAGGATGAACAAAAGCTATCTAATGAAGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAGAACTGTAGAGATGTCGTCTTGCCAAATTGTGGTCATTCGATGTGCCTCAACTGCTTTAAAGACTGGAGTGCGAGATCACGTTCCTGTCCATTCTGTCGTAACTGTCTAAATAGGTTGAGCACCAGGGATCTATGGATTCTTACAAGCGATACTGAAATCATCGACTCCGAAACTCTTGCCAAGGAAAATTTATTACATTTCTACCTTTACACCGAAAGCCTCCCACTATTTCAACCAGACATGAATATTTTTATACCAGATTATATGTTGTGA 732 41.39 MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEWMDFNCTDPVPSFLGLFHILLYKVYVDGKPLVSPRERKATLKEFYAVIYPSLRQLQSGRVDSKEETSPRKITEDEQKLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLNCFKDWSARSRSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIPDYML 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3941780 3944298 - MELO3C011907.2.1 Cme10g00618 339504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00618 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 187 - -
Cme10g00618 243 SUPERFAMILY RING/U-box 136 191 - -
Cme10g00618 243 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 3 243 - -
Cme10g00618 243 SMART ring_2 148 185 IPR001841 -
Cme10g00618 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Cme10g00618 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 195 IPR013083 -
Cme10g00618 243 PANTHER RING FINGER PROTEIN 41, 151 3 243 - -
Cme10g00618 243 MobiDBLite consensus disorder prediction 118 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00618 - - - csv:101207887 504.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02716 Cme-Chr4:32568444 Cme10g00618 Cme-Chr10:3941780 1.05E-79 dispersed
Cme10g00618 Cme-Chr10:3941780 Cme12g00094 Cme-Chr12:941556 6.26E-75 dispersed
Cme10g00618 Cme-Chr10:3941780 Cme10g00620 Cme-Chr10:3955647 1.18E-74 proximal
Cme10g00618 Cme-Chr10:3941780 Cme03g02200 Cme-Chr3:28944122 1.90E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00618 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0