Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00619 ATGGGGTTTCCTCTTTTTTGGGGTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCCATTGTCAGGTTAAAGATTGTGGAGGGACAAAGAATTACACCGACCCAGTTACAGGGCTGGCATGGATTTCCGACGCCGGAATTATGAACGCCGGTGGGTCATCACCAGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGAGACTTTCCAATCGACGACAAGAAGTACTGTTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTTCGGGCAACTTTTCAATATGGGAGTTTGAAAGATGAAGAAACTTACCCTAAATTTCAGCTCTATTTGGATGCAACTAAGTGGTCTACTGTTACTATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATCATCAGGGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCGTTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCTTTAACCAAGGATGCGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATTAGCACATTGAATAATATTAATGTAATGACCAGAGAATATCCACCTGTTAAAGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCTAGGGCTTATGCATATTTTGCTGAGATCGAAGATTTGGGTTGGAACGAGACTCGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAATGCAGTGGTGAATATTGCAGAGAATGCCAATGGGACGTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTTGTGCTTTCGTTCTCGTTTGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGCAGATATGTTGAAATTGCTCCCAAGACTGATGGGCGAGATGAGGCTGTTGCGAATATCTTCCGTAACGTGTCAGCAGAGAATGTCTGGTCAAATATAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCACCAAGAATAACTAAAATAGAGCTTTCCAGAAAGAATCTCAAGGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTGATGGAACTGTGGTTGGATGGAAATTCTCTTGCAGGGCCACTTCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTCGAGAATAACAAATTAACAGGGACATTGCCTTCTTACCTGGGTAGTTTACCCAACTTACAGGAACTGTACGATGGTAACGTGGAGCTGTACAAAAGTGAACGAGACAAGGTGCATTCTAAGCTTATATTAGGAGTTTCATTGGGAGTGCTTGTGCTTCTGGTTATTCTACTTTTAGGAAGTTTGCTATTACTCCGCAAGCTTCGAAGAAAAACGGCACCTTACCAGAAAAAAGGTGGTTCTCTGAATATCAGCACGAAACGCTCTTCGGCATACTCAATCGGCAAGGGGGACGAAGGCATGGCCTACTATTTATCCCTCTCCGAGCTGGAAGAGGCGACAAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAAATGAATGATGGCAAAGAAGTTGCCGTCAAGATCATGGCCGAGTCATCTACACATGGGAATCAACAATTTATGACTGAGGTTGCCCTCTTATCAAGAATTCATCACCGGAATTTGGTCCCTTTGATCGGATACTGCGAAGAAGAACATCAACGGATACTGGTATATGAATACATGCATAATGGGACGTTGCGAGATCACTTATATGGTTCTACGACTCAAAAGCACTTGGACTGGCTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTTGAGTATTTGCACACAGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAAGTTTCTGACTTTGGCCTCTCGAGGCAAGCTGAGGAAGATTTGACCCACGTTTCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTATTATGCTTGTCAACAACTCACCGAAAAGAGCGACGTATATAGTTTTGGGGTCGTGCTGCTCGAACTGATTTCTGGGAAGAAACCTGTCTCACCAGAAGACTACGGCAATGAATTGAACATTGTTCACTGGGCGAGGTCCCTGGTCCATAAAGGGGACGTGACGAGCATCGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCCGAAGTTGCCATACAGTGTGTGCAACAGCATGGAGTTTCCAGACCAAGGATGCAAGAAGTCATCTTAGCCATACAAGATGCAATCAAGATTGAACATGGTGGTACCGAAGGGAACCAAAAGCTATCTTCAGACAGTTTAAAAGCACAATCATCTCGAAAAACTTTGCTGACGACCTTTCTTGAAATCGAGAGCCCCGATGGTTCCCTCCTTCCATCTGCAAGATAA 2688 43.27 MGFPLFWGLILLLVVSSVHCQVKDCGGTKNYTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKDEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDAIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAPKTDGRDEAVANIFRNVSAENVWSNIGDPCVPTSWEWVTCSATQPPRITKIELSRKNLKGEIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYDGNVELYKSERDKVHSKLILGVSLGVLVLLVILLLGSLLLLRKLRRKTAPYQKKGGSLNISTKRSSAYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMNDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEHGGTEGNQKLSSDSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3947099 3953235 + MELO3C011906.2.1 Cme10g00619 339505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00619 895 PANTHER - 23 490 - -
Cme10g00619 895 PANTHER - 485 861 - -
Cme10g00619 895 SUPERFAMILY Protein kinase-like (PK-like) 561 842 IPR011009 -
Cme10g00619 895 PANTHER OS07G0107800 PROTEIN-RELATED 23 490 - -
Cme10g00619 895 PANTHER OS07G0107800 PROTEIN-RELATED 485 861 - -
Cme10g00619 895 SMART serkin_6 575 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00619 895 Gene3D Phosphorylase Kinase; domain 1 549 650 - -
Cme10g00619 895 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Cme10g00619 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Cme10g00619 895 Pfam Protein tyrosine and serine/threonine kinase 577 842 IPR001245 GO:0004672|GO:0006468
Cme10g00619 895 Gene3D Transferase(Phosphotransferase) domain 1 651 868 - -
Cme10g00619 895 ProSiteProfiles Protein kinase domain profile. 575 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00619 895 Gene3D Ribonuclease Inhibitor 372 528 IPR032675 -
Cme10g00619 895 SUPERFAMILY L domain-like 391 491 - -
Cme10g00619 895 CDD STKc_IRAK 581 842 - -
Cme10g00619 895 Pfam Malectin-like domain 24 355 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02562 Cme-Chr4:31739714 Cme10g00619 Cme-Chr10:3947099 0 dispersed
Cme06g02040 Cme-Chr6:25621666 Cme10g00619 Cme-Chr10:3947099 1.17E-71 dispersed
Cme10g00619 Cme-Chr10:3947099 Cme04g01160 Cme-Chr4:15872393 2.03E-157 dispersed
Cme11g02389 Cme-Chr11:30792554 Cme10g00619 Cme-Chr10:3947099 6.21E-101 dispersed
Cme10g00619 Cme-Chr10:3947099 Cme04g01159 Cme-Chr4:15829451 3.90E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65200 PF12819 Malectin_like 3.00E-86 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00619 - - csv:101207149 1704.88