Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00620 ATGTATTATCAGCTCGAGAAATTCTCTCATCAGGATTCTCTGGAAGTCTTGGAAGCGGATATTCAGTATGCTAATTCTTTGGCTGCTGCAATCCCCATGGCAAAAGGGGGTGTCTACCTTCAAATGAAGTTGGTTTATAATCACTTGGCTCCCATTGTTCTGTTTTTGCTACAATGGATGGATTGTTCTTGCACTTGCTTGCTTCCAAGATATTTGAACCTCTTCCACATACTTGTGTACAAGGTATATCCGGAGGGGAAACAAAAACAAAATATATCAAGGCATGGAAGGAAGGCAACTATTAGGGATTTCTATGCTATAATATTGCCTTCGCTTCAGCGAATCCATGGTAGCTTGGATAAGTTGGACGATTGCAAGGAAGGGCATCACTGGATTGAGATGTCTAGCAAGAAGAGAGGTGATAAAGATGGTAGACTCAAGAACATCGATATGAAGCGAGAAGACGAGTGTGGTATTTGCTTGGAGCCCTGTACAAAGATGGTTTTGCCGAATTGCTGTCATTCAATGTGCATCAAATGCTATCGTAATTGGAACACAAGGTCAGAATCATGTCCATTTTGTCGTGGCAGCTTGAAGAGGGTCAACTCAGAGGACTTATGGGTGCTCACGTGCAGCGATGATGTGGTTGATACTGAAACCGTCTCCAAGGAGGACATGTTGCAGTTTCATCGCTACATAAACAGCCTTCCAAAAGACTATCCAGATGCCCTCTTCATAGTATATTCCGAATATCTAATTTAG 762 42.39 MYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMAKGGVYLQMKLVYNHLAPIVLFLLQWMDCSCTCLLPRYLNLFHILVYKVYPEGKQKQNISRHGRKATIRDFYAIILPSLQRIHGSLDKLDDCKEGHHWIEMSSKKRGDKDGRLKNIDMKREDECGICLEPCTKMVLPNCCHSMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINSLPKDYPDALFIVYSEYLI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3955647 3957786 + MELO3C011905.2.1 Cme10g00620 339506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00620 253 PANTHER RING FINGER PROTEIN 41, 151 5 253 - -
Cme10g00620 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Cme10g00620 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Cme10g00620 253 PANTHER F21J9.10 5 253 - -
Cme10g00620 253 SUPERFAMILY RING/U-box 148 200 - -
Cme10g00620 253 SMART ring_2 157 194 IPR001841 -
Cme10g00620 253 Pfam Ring finger domain 155 195 IPR001841 -
Cme10g00620 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 205 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00620 - - - csv:101206911 525.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02200 Cme-Chr3:28944122 Cme10g00620 Cme-Chr10:3955647 1.16E-133 dispersed
Cme10g00620 Cme-Chr10:3955647 Cme12g00094 Cme-Chr12:941556 1.20E-68 dispersed
Cme10g00618 Cme-Chr10:3941780 Cme10g00620 Cme-Chr10:3955647 1.18E-74 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00620 Cme_Chr10 FPKM 1.48217 1.34217 22.444065 21.829098 61.459412 66.595299 62.108879 28.67063 29.061531 27.680536