Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00626 ATGGCATTCCAAATCCAAATCGTTTCAAAAGAAACAATCAAACCCTCTTCTCCGACGCCGGACCACCTTCGTCGTTACAGTTTATCTTTCCTCGATCAAGTCACCGTCGATGTCTACAACCCAATGGTCTATTTCTTTGTCGCCGGCTCCACCACCACCCCTGCAGAAATAGCCGACCGCCTAAAAACATCCCTCTCCGACGTCTTGACCCATTACTACCCTCTCGCCGGTAGACTCAACTACGATGAGTTTTTCATTGACTGCAACGACGATGGTGTCCCCTTCATTGAAACCAGAGTCAACTGCCCGCTTTCTGATGTAATGAACACGCCATTTCCTTCCGAATTGAACAGATTGCTTCCATTTGAATTGGACAAGCTTGACGATGTTTCAATGGGGGTTCAGTTGAATGTGTTCGAATGCGGCGGCGTTGCTGTTGGAATCTGTGTTTCTCATAAGATTAGTGATGCTCTGTCTTTTTTCATTGTGGTTAATGGGTGGGCGGCGTATTGTCGAGGAGAGAAGGAGGCATTGCGAGCTCATTTGTCGTCGGCCGAGGTGTTTCCACCGACGAAGACGAAGGTTCACAACACGAGGACGAGTATTTTTAGACAGAGAGTAGGGAGACGGTATCATATTGATGCAGCAAACGTTGAAACCATTAGAGCTAAATATGCAGAGTGTCCTGCCATGGAAAACCAAAGGCGACCTTCGAGAGTTGAGGCTTTGTCTACTTTCATCTATAGCCGTTTTATTGCCGCCATTAAAGCGGTTTCAAAGGAACGCTTGGAAAATGGAAGCTCGGAAACAGAGAAAAAGATATTCTTAGTATGTCACTCCGTAAACATACGTTCAAGACTTGACCCACCAGTTCCTGATTATGCATTTGGAAACTATTATCGAACCACATTTGCACCTCCTTCAGAGGAGATTCTTAACGACGAGTACTGTTACGATCTTGTGAAGCAAGTGAGGGAAGAAATTGGGAAGATCAACAAAGATTATCTTAAAAGGCTTCAAGAAAGCTCGAAATTCATCGAATCCATGAAAAAGACTGCCTCCCAATTCTTCACTGGCGAACTCGTCTCTTGCTCCTTCACTAGCCTTTGTCGGATGCCGATCTACGACATCGATTTTGGATGGGGACAACCCGACTGGATAAGCTCCCCAGCCTTGCTTTTCAAGAACCTTTTTGTCTTCATTGACAAGAAAGATGGCGATGGAATTGAGATTTATGTTCATCTCACCGAAGAGCACATGAAAAAGTTTGAAATAGATGAAGAGTTTCTCAAGTACGCGAAGTTGCCTTCTAATTAA 1317 44.8 MAFQIQIVSKETIKPSSPTPDHLRRYSLSFLDQVTVDVYNPMVYFFVAGSTTTPAEIADRLKTSLSDVLTHYYPLAGRLNYDEFFIDCNDDGVPFIETRVNCPLSDVMNTPFPSELNRLLPFELDKLDDVSMGVQLNVFECGGVAVGICVSHKISDALSFFIVVNGWAAYCRGEKEALRAHLSSAEVFPPTKTKVHNTRTSIFRQRVGRRYHIDAANVETIRAKYAECPAMENQRRPSRVEALSTFIYSRFIAAIKAVSKERLENGSSETEKKIFLVCHSVNIRSRLDPPVPDYAFGNYYRTTFAPPSEEILNDEYCYDLVKQVREEIGKINKDYLKRLQESSKFIESMKKTASQFFTGELVSCSFTSLCRMPIYDIDFGWGQPDWISSPALLFKNLFVFIDKKDGDGIEIYVHLTEEHMKKFEIDEEFLKYAKLPSN 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3991631 3993507 + MELO3C011900.2.1 Cme10g00626 339512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00626 438 Gene3D - 205 431 IPR023213 -
Cme10g00626 438 PANTHER F21J9.9 3 434 - -
Cme10g00626 438 PANTHER ANTHRANILATE N-BENZOYLTRANSFERASE 3 434 - -
Cme10g00626 438 Pfam Transferase family 4 429 - -
Cme10g00626 438 Gene3D - 1 200 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00626 K13065 E2.3.1.133, HCT; shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133] - csv:101207639 832.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme09g01302 Cme10g00626 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02194 Cme-Chr3:28917944 Cme10g00626 Cme-Chr10:3991631 2.06E-154 dispersed
Cme10g00626 Cme-Chr10:3991631 Cme12g01614 Cme-Chr12:23364093 4.25E-101 dispersed
Cme10g00626 Cme-Chr10:3991631 Cme10g00627 Cme-Chr10:3994880 0 tandem
Cme05g01775 Cme-Chr5:26745808 Cme10g00626 Cme-Chr10:3991631 1.90E-09 transposed
Cme07g01467 Cme-Chr7:20452013 Cme10g00626 Cme-Chr10:3991631 1.09E-16 transposed
Cme08g01990 Cme-Chr8:25026862 Cme10g00626 Cme-Chr10:3991631 1.00E-33 transposed
Cme10g00626 Cme-Chr10:3991631 Cme03g02193 Cme-Chr3:28910791 1.41E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g534 . . . . . . Bma14g01923 . . . . . . . Sed04g0545 . Cpe01g01858 Bhi07g01847 Tan04g0120 Cmetu10g0423 . Hepe10g1556 . . . . . . . . . . . Cone6ag0342 Cone9ag0376 Lsi04g00640 Csa05g01966 . Cme10g00626 . Blo11g00965 . . . . . . . Cmo04g02235 Cmo15g00925 Cma04g02142 Cma15g00887 Car04g02077 Car15g00833 Cpe13g00429 . Bhi12g00965 . . . . . . Cla01g00654 Cam01g0683 Cec01g0676 Cco01g0703 Clacu01g0671 Cmu01g0644 Cre09g1861 Lsi09g00708 Csa05g00994 . Cme09g01302
Vvi1g1130 . Blo16g01184 . . . . . . . . . . . . Sed04g0539 . Cpe01g01593 Bhi07g01861 Tan04g0104 Cmetu10g0799 Lac13g0094 Hepe10g0071 . . Cla05g02630 Cam05g2822 Cec05g2857 Cco05g2890 Clacu05g2825 Cmu05g2673 Cre05g2790 Cone13ag1116 Cone19ag1102 . . . . . Cme10g00626 . . . . . . . . . . . Cma04g01809 . Car04g01822 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001045 1 3 2 1 1 3 2 3 3 4 2 3 2 4 4 1 3 4 2 3 4 2 3 4 2 5 3 2 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00626 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0