Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00627 ATGGCCGTCCAAATCGAAATCGTTTCTAAAGCAATAATCAAACCCTCTTCCCCAACGCCGGAGCATCTCCGCCGTTACAGTTTATCCTTCCTCGACCAAGTCACCGTCGATGTCTACAACCCAATGGTCTATTTCTACCCCGCTGGCGGCTCTGCCACCCCCGCAGAAATCTCCGACCACCTGAAAAAATCCCTCTCCCATGTCTTGACCCATTACTACCCTCTCGCTGGTAAAGTAAACTACGACGAGTTTTTCGTAGACTGCAACGACGACGGTGTCCCTTTCATTGAAACCAAAATCAACTGCCGAATGTCCGGTGTAATGAACACGCCGTTTCCTTCTGAATTAAACAAATTTCTTCCGTTCGAATTGGACCAGCTTGACGAAGTCTCAATGGGGGTTCAGTTGAATGTGTTCGAATGCGGCGGCGTTGCTGTTGGGATCTGTGTTTCTCATAAGATTAGCGATGCTCTGTCTTTGTTCATTGTGGTTAATGAGTGGGCGGCATATTGCCGGGGGGAGAAGGAGGTGGTGCGGGCTCATTTGTCCTCGGCGGAGCTATTTCCGCCGACGAAGACCGGGCTTTACAACACGAGGACGAGTATTTTTAGACAAAGAGTGGCGAGACGGTATGAAATTGATGGTGGGAATGTTGAAAGTATTAGAGCTAAATATGCAGAGTGCTCTGCCATGGAAAGCCAAAGGCGGCCTACGAGAGTTGAAGCCTTGTCTGCCTTCATCTATGGTCGTTTTATTGCCGCCATTAAAGCCGTAGTTTCTAGTTCAGAGTTGGAGAATGGAAGGTCCACGGAATTGGAGAAGAACATATTCCTAGTATGTCACTCTGTAAACATACGATCAAGGCTCGACCCGCCGGTTGTGGATTACGCATTTGGAAACTATTATCGAACCACGTTTGCAGTTCCCGCTGAGAATATTCTCAATGACACTTACTGTTACGATCTTGTGAAGCAGGCAAGGGATGAAATTGGGAAGATCGACAAAGAATATCTAAAAAGGCTTCAACAAGGTTCGAAATTTCTCGACTCCATGAAGAAGACGGCCGCACAATTCTCTACCGGTGAACTTATCTCTTGCTCCTTCACTAGCCTCTGTCGGATGCCTATTTATGATGCTGATTTTGGGTGGGGCAAACCCGCTTGGATCGGCTCCCCAGCATTGATGTTCAAGAATCTCTTTGTCTTCATTGACAAAAAAGATGGTGATGGAGTTGATATTTATGTTCATCTCAAGCAAGAGCACATGAATAAGTTTGAAATGGACGAAGAGTTCCTCAAGTATGCCAAGTTGCCTTCTAATTAA 1323 46.49 MAVQIEIVSKAIIKPSSPTPEHLRRYSLSFLDQVTVDVYNPMVYFYPAGGSATPAEISDHLKKSLSHVLTHYYPLAGKVNYDEFFVDCNDDGVPFIETKINCRMSGVMNTPFPSELNKFLPFELDQLDEVSMGVQLNVFECGGVAVGICVSHKISDALSLFIVVNEWAAYCRGEKEVVRAHLSSAELFPPTKTGLYNTRTSIFRQRVARRYEIDGGNVESIRAKYAECSAMESQRRPTRVEALSAFIYGRFIAAIKAVVSSSELENGRSTELEKNIFLVCHSVNIRSRLDPPVVDYAFGNYYRTTFAVPAENILNDTYCYDLVKQARDEIGKIDKEYLKRLQQGSKFLDSMKKTAAQFSTGELISCSFTSLCRMPIYDADFGWGKPAWIGSPALMFKNLFVFIDKKDGDGVDIYVHLKQEHMNKFEMDEEFLKYAKLPSN 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3994880 3996615 + MELO3C011899.2.1 Cme10g00627 339513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00627 440 Gene3D - 1 196 IPR023213 -
Cme10g00627 440 Pfam Transferase family 4 431 - -
Cme10g00627 440 PANTHER F21J9.9 2 436 - -
Cme10g00627 440 PANTHER ANTHRANILATE N-BENZOYLTRANSFERASE 2 436 - -
Cme10g00627 440 Gene3D - 205 433 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00627 K13065 E2.3.1.133, HCT; shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133] - csv:101218593 831.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02195 Cme-Chr3:28920462 Cme10g00627 Cme-Chr10:3994880 4.98E-161 dispersed
Cme10g00627 Cme-Chr10:3994880 Cme12g01614 Cme-Chr12:23364093 1.12E-96 dispersed
Cme10g00626 Cme-Chr10:3991631 Cme10g00627 Cme-Chr10:3994880 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1131 . Blo16g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1115 Cone19ag1101 . . Lsi04g00647 . . Cme10g00627 . . . . . . . Bma06g00583 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001045 1 3 2 1 1 3 2 3 3 4 2 3 2 4 4 1 3 4 2 3 4 2 3 4 2 5 3 2 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00627 Cme_Chr10 FPKM 0.0 0.235105 0.0 0.0 0.193125 0.0 0.187349 0.114989 0.129933 0.0