Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00632 GTTCCTTGTGTACCTCAATCTGAAACAGCTGAATATGCTTCCTCGTTGCTAGAAGAATCACTTCAGAGAAAGAAAGTTGAATGTTCTTCATTGCCTAATGCTATATTTTTAGCCACATGGAAATCCCTTGTCTTAACTGCAATTTTTGCAGGAGTCAACACATTGGCATCCTTTATGGGGCCTTTACTAATCACCCACTTTGTGAATTATCTGTTGGGAAAAAGTGATGACTCAAGCAACCGTGATGGATTGATTCTTGCGTTCTTCTTCTTCTTTGCTAAAACAACGGAGTCTCTTACTCAAAGACAATGGTATTTCGGCACTCACCGTGCCGGTATACAGGTAAGGGCAGCTCTTACGGTGATGATCTACAAGAAATCTATATCTATTAATGCTGCTGGTCCGAGTAACGGTAAAATCATAAATCTAATAAACGTGGATGTTGAAAGAATTGGAGACTTCTCTTGGTATATTCATAAGATTTGGTTGCTTCCCGTTCAAATAGCTCTAGCCCTTGTCATCCTTTACAGGAATCTCGGAGCTGCTCCTTCCATTACTGCTCTTTTAGCCACAATATTTATAATGGTGAGCAATACACCTTTGGCTAATGTTCAAGAAAGTCTACACTCAAAGATAATGGATGCAAAAGACTCAAGAATCAAATTGACATCAGAGACTCTGAAGAACATGAGAGTCTTGAAACTGCATTCTTGGGAACAGACATTTTTGAAGAAGGTCTTGAAACTTAGAGAAGTTGAAAGAAGCTGGTTGAAGAGATATCTCTACACATGCTCAGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTATTTACTTTTGCCGCTTGTGTTATGATGAAAGTCCCCCTCACAGCAGGCACAGTTCTATCAGCCATTGCTACTTTTCGTATACTACAAGAACCAATTTATAACCTACCAGAGCTAATTTCCATGATTGCTCAAACAAAAGTTTCCCTTGACCGTATACAAGAGTTCATTCGAGAAGAAGATCAAAGGAAGCGGATTTATTGTCCTCCTTCCAATGCATCGGACGTTGCGATTGAAATGGAGGTGGGGGAGTATTCATGGGAAGCCAGTGATCAAAATTTTAAGAAACCAACTATAAAAGTTGCTGAAAAGATGCAAATACCAAAGGGTTACAAAGTTGCAGTTTGTGGATCAGTTGGTTCAGGAAAATCAAGCCTACTTTGTAGTATATTGGGCGAAATTCCACAGGTTTCAGGAACACAAATGAAAGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCGGGCACTGTAAGAGAGAATGTGTTGTTTGGGAAAGAGATAGACAAACATCTGTATGAGGATGTGTTAGAAGCCTGTGCTTTGAATCAGGATATCAAGTTATGGTTGGATGGAGATTGTTCTTTGTTGGGAGAGAGGGGGATGAACTTAAGTGGAGGGCAAAAGCAGAGGATTCAATTGGCAAGAGCTGTCTATAGTGATGCAGATGTTTACTTCCTGGATGATCCTTTTAGTGCCGTGGATGCATGTACTGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTTTGTCTGGTAAAACTGTGGTATATGCTACTCATCATTTGGAATTCATAGAAGCTGCAGATCTTGTTCTGGTGATGAAAAATGGTCAAATTGTTCAATCAGGAAAGTACGCAGAATTAATGTCAGACTCAAACGGTGAACTTGCAAGGCACATTGCAGCTCATAGAAGATTCCTAAATGGAGTTAAGCCATTCAAAGAAGATAAACCCCATCATAAGAGACCGCAGAAGACACATCAGATAGAAGTTCTAGATGAAAACTCTTCCCTATCCCTTGGAAATGGTAGCAACTCCGTGAGAACTCAAGAAGAGGAAACTCAAACTGGTCGTGTAAAATGGAGTGTCTACTCAACCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTCTATGTCAAGTTTTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGGAAGGTCAGCAGAGGGCAGTTGTTAGGGATCTTCATTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGAGCCGTTTTGATGGCAACCATTGCTATTGAGACTGCACAACGAATGTTCCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTCTTTGATGCCAAACCTTCAAGCCAAATCCTTAGCAGATCTTCTACTGATCAAAGCACCTTGGATACAGATATTCCTTATAGATTAGGTGGATTGGCTTTTGCTCTCATTCAGTTATTGAGTATCATCATTCTGATGTCCAAGGTCGCATGGCAAGTTTTTCCCCTCTTTCTTGTCGTCCTTGCAATCTCTATATGGTATCAGGCAAGACATACATTCTACTCTTTTACTGCTAGAGAATTAGCTAGAATGGTTGGGATTCGGAAGGCTCCAATTCTTCATCACTTTTCTGAAACGGTCGTTGGTGCAACAATTATCCGTTGTTTCAATCAAGAGGATCGTTTCTTGAAAAAAATACTAAACCTGGTTGATGACTATTCACGTGTGGTTTTCCATAACTCAACTTCGATGGAATGGTTGTGCCTTCGGATCAATTTTCTTTTTGACGTGGTCTTCTTTCTTGCTCTTATCATCTTAGTGACCCTTCCTAGAACAGCAATTGATCCAAGCTTAGCAGGATTAGCAGCCACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTTATATGGAATTTATGCAACGTTGAGAACAAAATGATATCTGTTGAGAGAATTCTTCAGTTTACTAACATCGCTTCTGAGGCGCCACCGGTTATTGAAGATTGTAGACCAATGCCAGAATGGCCAAAGGAGGGAAAGATAGAACTTGAGAACCTTCACGTCCAATACCGTCCTGATCTTCCAGTGGTTCTCAAAGGGATTACTTGTACCTTCCCAAAAATGAAGAAAATTGGAGTTGTTGGCAGGACAGGAAGTGGAAAATCCACCTTAATCCAAACACTTTTTAGAGTAGTAGAGCCTTCTGCAGGAAGAATTCTAATTGATGGAGTTGACATTTGCAAAATTGGTCTACATGACCTCAGGTCCAAGTTGGGTATTATTCCACAAGACCCTACATTGTTCCAAGGAACCATGAGAACTAACCTAGATCCTTTACAACAACACACCGATCAAGAAATATGGGAGGTCCTTCACAAGTGTCGTTTTTCCGAGATCATCAGAACGGACCATGCTGTTCTTGAAGCACGAGTGGCTGAAGATGGAGAGAATTGGAGTGTGGGACAGCGGCAACTTGTTTGCCTAGCCAGGGTGCTCCTCAAGAAGCGTAGAATTCTTGTGTTGGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAGGAAACAATAAGAGAGGAGACTAATGGTTGTACCGTCATTACCGTTGCTCATCGAATACCGACAATTATCGATAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTCATCGAGTACGATTCACCATCTCGATTACTCAAGAACAATTCTTCTATGTTTTCAAAGTTGGTGGCAGAATTCTTGAGCAGATCATCCAATAGTCACGCACAATCTATGGGGAATTTTGTTGACACCGACACAAACCGAATATGA 3717 40.7 VPCVPQSETAEYASSLLEESLQRKKVECSSLPNAIFLATWKSLVLTAIFAGVNTLASFMGPLLITHFVNYLLGKSDDSSNRDGLILAFFFFFAKTTESLTQRQWYFGTHRAGIQVRAALTVMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALVILYRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQTFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVFTFAACVMMKVPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKRIYCPPSNASDVAIEMEVGEYSWEASDQNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHLYEDVLEACALNQDIKLWLDGDCSLLGERGMNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVVYATHHLEFIEAADLVLVMKNGQIVQSGKYAELMSDSNGELARHIAAHRRFLNGVKPFKEDKPHHKRPQKTHQIEVLDENSSLSLGNGSNSVRTQEEETQTGRVKWSVYSTFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEEEGKVSRGQLLGIFILMSGGSSIFILGRAVLMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILSRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQVFPLFLVVLAISIWYQARHTFYSFTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLKKILNLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPMPEWPKEGKIELENLHVQYRPDLPVVLKGITCTFPKMKKIGVVGRTGSGKSTLIQTLFRVVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHTDQEIWEVLHKCRFSEIIRTDHAVLEARVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETNGCTVITVAHRIPTIIDNDLVLVLDEGKVIEYDSPSRLLKNNSSMFSKLVAEFLSRSSNSHAQSMGNFVDTDTNRI 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4026934 4032059 + MELO3C011894.2.1 Cme10g00632 339518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00632 1238 CDD ABCC_MRP_domain1 357 562 - -
Cme10g00632 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1206 IPR027417 -
Cme10g00632 1238 Pfam ABC transporter transmembrane region 667 906 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme10g00632 1238 Pfam ABC transporter transmembrane region 45 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme10g00632 1238 Gene3D ABC transporter type 1, transmembrane domain 627 960 IPR036640 GO:0005524|GO:0016021
Cme10g00632 1238 Gene3D ABC transporter type 1, transmembrane domain 33 341 IPR036640 GO:0005524|GO:0016021
Cme10g00632 1238 PANTHER OS01G0902100 PROTEIN 1 1222 - -
Cme10g00632 1238 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1222 - -
Cme10g00632 1238 CDD ABC_6TM_ABCC_D2 661 954 IPR044726 GO:0140359
Cme10g00632 1238 Gene3D - 342 595 IPR027417 -
Cme10g00632 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 663 942 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme10g00632 1238 Gene3D - 963 1215 IPR027417 -
Cme10g00632 1238 Pfam ABC transporter 996 1144 IPR003439 GO:0005524
Cme10g00632 1238 SUPERFAMILY ABC transporter transmembrane region 39 340 IPR036640 GO:0005524|GO:0016021
Cme10g00632 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 576 IPR027417 -
Cme10g00632 1238 SUPERFAMILY ABC transporter transmembrane region 661 961 IPR036640 GO:0005524|GO:0016021
Cme10g00632 1238 CDD ABC_6TM_ABCC_D1 45 332 IPR044746 GO:0140359
Cme10g00632 1238 Pfam ABC transporter 384 514 IPR003439 GO:0005524
Cme10g00632 1238 ProSitePatterns ABC transporters family signature. 487 501 IPR017871 GO:0005524
Cme10g00632 1238 SMART AAA_5 388 562 IPR003593 -
Cme10g00632 1238 SMART AAA_5 1005 1196 IPR003593 -
Cme10g00632 1238 CDD ABCC_MRP_domain2 977 1197 - -
Cme10g00632 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 585 IPR003439 GO:0005524
Cme10g00632 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 979 1213 IPR003439 GO:0005524
Cme10g00632 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00632 - - - csv:101219301 2337.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00632 Cme-Chr10:4026934 Cme11g02407 Cme-Chr11:30898792 3.58E-12 dispersed
Cme10g00632 Cme-Chr10:4026934 Cme10g00634 Cme-Chr10:4036532 8.07E-32 proximal
Cme10g00632 Cme-Chr10:4026934 Cme10g00633 Cme-Chr10:4036333 5.90E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00632 Cme_Chr10 FPKM 2.415534 2.614138 3.583077 3.775026 47.357929 42.944271 47.523888 2.538546 1.948442 2.245023