Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00641 TCAAATTGTTTTTCCTACACCGCTTTCTCTACACGAGTCAACGAGTTCGCGCTTCACTCTCTCCAAACTTCATTTTCCTTCGCATTTCAACGAGCTTTGTATCTGAAAAAACAACCATCCAACCACCTTCTTCCTCATTGTTCGGTAGTGACGAAAAGAATGAAGCTGAGTCCAAAGGAGTTGGATAAGCTAGGTTTGCATAATGCGGGATTTCTAGCACAGAAGCGTCTTGCTCGTGGTTTGAGGCTGAATTACACTGAAGCTGTAGCACTTATTGCCACACAGATTCTGGAGTTTGCACGGAATGGTGACAAGAGCGTGGCGGAATTGATGGAATTGGGACCAAAACTCTTAGGAAGGAGACAAGTTCTTCCAGCTGTTCCCCATCTTGTGGATTCTGTGCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAGTCACAGTTCATAATCCCTTTGAAGAAGAAAATGGGAACCTAGAACTCGCATTGGCGGGTTCTTTTCTTCCAGTTCCTTCACCAGAAAAGTTCCCTTTGATGGAAAGTAGTGTGGTGCCTGGTGAGATTATCTGTCCAAATGATAAGATTTCAATTAATGTTGGACGGAAAGCTGTTAGACTCAGTGTAGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGGTGAATCCTTCCTTGGTTTTTGATCGATCAAAAGCTTATGGAATGCGCCTCAACATTTCAGCCGGATCAGCTATACGGTTTGAGCCAGGGGATCGAAAATCTGTAACACTAGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACGGCATTGCTGATGGTCCAGTTGATAGTTCAAAATTGAAAGATGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATGTGGAAGAAAATAATGCTAGAGAAGGTATAGCTGGAATAGATGATGAATTCACCACGAGACTTTCTCGTGAGGATTATGCCAACCGGTATGGTCCTACCACTGGTGACAAAGTTCGACTTGGTGACACAGATCTATATGCAGAAATTGAGCACGATTTCTCCGTTTATGGAGATGAGTGTGTATTTGGAGGAGGAAAGGTTATTAGAGAGGGAATGGGCCAATCCTGTGGGCATCCACCAACTTTGTCCCTTGATACTGTAATAACCAATGCAGTCATCATTGATCACTGTGGAATTTTCAAGACAGATATCGGTATCAAAAATGGCTTCATTATGACCCTTGGAAAAGCTGGAAATCCTGACGTCATGGATGGTGTTTTCCGCGACCTGATTATTGGGGCTAATACTGAGGTTATTGCTGGAGAAGGATTACTCGTTACTGCAGGGGCTATAGATTGTCATGTGCATTTCATATGCCCTCAACTGGCATATGAAGCAATATCAAGTGGCATCACAACACTGGTGGGAGGTGGAACTGGGCCTGCCGCAGGAACTTGTGCTACTACTTGCACACCATCTCCAGTGCAGATGAGGATGATGCTGCAATCAACTGATGACCTCCCCTTGAATTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGAGGAGCTGTATGAAATAGTGCGCGCTGGAGCAATGGGGCTGAAGCTACATGAAGATTGGGGAACTACTCCTGCTGCAATTGACAATTGTTTAACTGTGGCAGAAAAATATGACATTCAGGTGAATATTCACACTGACACTCTGAATGAATCTGGATTTGTGGAACATACAATTGCAGCTTTTAAGGGAAGAACTATTCACACATACCACAGTGAAGGAGCTGGAGGTGGTCATGCTCCAGATATTATTAGAGTGTGTGGTGTGAAAAATGTGCTGCCTTCATCAACTAATCCTACACGACCATTCACGATGAATACTGTAGATGAACATCTTGACATGCTGATGGTGTGTCATCATCTCGATCGCAATATTAAAGAAGATGTAGCTTTTGCAGAATCAAGGATAAGGAAGGAGACAATTGCAGCAGAAGATATTTTGCATGATATGGGGGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGTCGCATAGGAGAGGTTATTTCAAGAACGTGGCAAACTGCACACAAAATGAAGTTGGCAAGACCATCTCCATCAGACAATGATAACTTGCGGATTAAGCGATATATATCCAAATATACCATAAATCCAGCCATAGCAAACGGGTTTTCTCAGTATGTTGGTTCAGTTGAGGTGGGGAAGTTGGCTGATCTCGTTCTCTGGAAGCCAGCCTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGCATAATTGCATGGGCAAACATGGGTGATCCAAATGCAAGCATACCTACTCCTGAACCGGTACTGATGAGGCCAATGTTTGGATCTTTTGGAAAGGCTGGAAGTGCGAACTCAATTGCCTTTGTCAGCAAGGAAGCTGTTAACATCGGAGTTAAAGCCATGTACGGACTCGAAAAGAGAGTTGAAGCTGTAGGCAACATTAGGAAACTCACCAAACTTGACATGAAGTGGAATGATGCCCTTCCACTCATCGAAGTAGATCCCGAAACATACACGGTGAAAGCCGATGGCGAAGTTCTTACCTGCCAGCCCGCAACTTCTGTTCCACTTTCTCGAAATTACTTCCTTTTCTAA 2661 43.86 SNCFSYTAFSTRVNEFALHSLQTSFSFAFQRALYLKKQPSNHLLPHCSVVTKRMKLSPKELDKLGLHNAGFLAQKRLARGLRLNYTEAVALIATQILEFARNGDKSVAELMELGPKLLGRRQVLPAVPHLVDSVQVEGTFPDGTKLVTVHNPFEEENGNLELALAGSFLPVPSPEKFPLMESSVVPGEIICPNDKISINVGRKAVRLSVVNKGDRPIQVGSHYHFIEVNPSLVFDRSKAYGMRLNISAGSAIRFEPGDRKSVTLVAIGGNQVIRGGNGIADGPVDSSKLKDVMEAVHARGFGHVEENNAREGIAGIDDEFTTRLSREDYANRYGPTTGDKVRLGDTDLYAEIEHDFSVYGDECVFGGGKVIREGMGQSCGHPPTLSLDTVITNAVIIDHCGIFKTDIGIKNGFIMTLGKAGNPDVMDGVFRDLIIGANTEVIAGEGLLVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPAAGTCATTCTPSPVQMRMMLQSTDDLPLNFGFTGKGNSSKPEELYEIVRAGAMGLKLHEDWGTTPAAIDNCLTVAEKYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTMNTVDEHLDMLMVCHHLDRNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHKMKLARPSPSDNDNLRIKRYISKYTINPAIANGFSQYVGSVEVGKLADLVLWKPAFFGAKPEMVIKGGIIAWANMGDPNASIPTPEPVLMRPMFGSFGKAGSANSIAFVSKEAVNIGVKAMYGLEKRVEAVGNIRKLTKLDMKWNDALPLIEVDPETYTVKADGEVLTCQPATSVPLSRNYFLF 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4079847 4089053 - MELO3C011884.2.1 Cme10g00641 339527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00641 886 Hamap Urease subunit alpha [ureC]. 322 886 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 PRINTS Urea amidohydrolase (urease) protein signature 746 759 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 PRINTS Urea amidohydrolase (urease) protein signature 720 735 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 PRINTS Urea amidohydrolase (urease) protein signature 657 673 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 PRINTS Urea amidohydrolase (urease) protein signature 618 635 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 SUPERFAMILY Metallo-dependent hydrolases 452 886 IPR032466 -
Cme10g00641 886 Hamap Urease subunit beta [ureB]. 184 284 IPR002019 GO:0035550|GO:0043419
Cme10g00641 886 Pfam Amidohydrolase family 448 772 IPR006680 GO:0016787
Cme10g00641 886 PANTHER UREASE 54 886 - -
Cme10g00641 886 SUPERFAMILY Composite domain of metallo-dependent hydrolases 728 798 IPR011059 GO:0016810
Cme10g00641 886 TIGRFAM urease_gam: urease, gamma subunit 54 154 IPR002026 GO:0016151|GO:0043419
Cme10g00641 886 Pfam Urease, gamma subunit 54 152 IPR002026 GO:0016151|GO:0043419
Cme10g00641 886 CDD Urease_alpha 323 885 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 Pfam Urease alpha-subunit, N-terminal domain 323 442 IPR011612 -
Cme10g00641 886 Gene3D Urease, beta subunit 202 321 IPR036461 -
Cme10g00641 886 CDD Urease_beta 184 284 IPR002019 GO:0035550|GO:0043419
Cme10g00641 886 CDD Urease_gamma 57 153 IPR002026 GO:0016151|GO:0043419
Cme10g00641 886 SUPERFAMILY Urease, gamma-subunit 54 157 IPR036463 GO:0016151|GO:0043419
Cme10g00641 886 TIGRFAM urease_beta: urease, beta subunit 185 285 IPR002019 GO:0035550|GO:0043419
Cme10g00641 886 ProSitePatterns Urease active site. 640 656 IPR017950 GO:0009039
Cme10g00641 886 SUPERFAMILY Composite domain of metallo-dependent hydrolases 323 500 IPR011059 GO:0016810
Cme10g00641 886 Pfam Urease subunit beta-alpha linker domain 284 317 IPR040881 -
Cme10g00641 886 Gene3D - 452 867 - -
Cme10g00641 886 ProSiteProfiles Urease domain profile. 452 886 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 SUPERFAMILY Urease, beta-subunit 185 312 IPR036461 -
Cme10g00641 886 ProSitePatterns Urease nickel ligands signature. 450 463 IPR029754 GO:0016151
Cme10g00641 886 Gene3D - 57 177 IPR036463 GO:0016151|GO:0043419
Cme10g00641 886 TIGRFAM urease_alph: urease, alpha subunit 324 886 IPR005848 GO:0006807|GO:0009039|GO:0016151
Cme10g00641 886 Pfam Urease beta subunit 186 282 IPR002019 GO:0035550|GO:0043419
Cme10g00641 886 Gene3D Urease, subunit C, domain 1 322 799 IPR011059 GO:0016810
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00641 K01427 URE; urease [EC:3.5.1.5] - csv:101209590 1612.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00641 Cme_Chr10 FPKM 0.0 0.0 6.850742 5.79557 28.434734 25.655954 24.779676 1.737896 0.902783 1.545985