Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00643 ATGGACGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTACATGGAGAAATGTACAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCAGGCTTTATGTTCGTTACATGTAGCTCTTGAGAAGGCTAAGAACACCCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCAATAACTGGAGATGCTGTTCAAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAGTTGGTGATGATATTATTGCATTACTCTTGCAAGAACGAAAATTTGATGATTCCAATGGCCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATAGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACAATGACTCACAGAGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTCAAGTCTTCGAACATCAGCTTTCAAAGCTTAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCCGGGCAGATGCCTCTTCCACCTGAGGAGTTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACTCAACAGAGACTCTCCCACCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAGTTGGTGTGAACATAACGGAGTTCCAATCCTGGATGGCCCACCAAAGTCGCTTGATCTCAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAAAATCACGATTTGTGGATAATGTTGGCTCTAACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGATGCTGAAGGAAATGAAGCAGATGATAATACGTACATGGAGGAGTCATCAGATTTTATTACACTTGAAAGTTGTGTAAATTTTATGGCAGTATTGACTGCAGAGGGAGATTTGAGAAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGACTTCCTAACTTTAGCTCTTATTGAAGAAAATAGTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCAGTCAACAACAACAGAAACAGGGAAATGATGATAGCGGCAGGCGTAATCTCATTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCTCTATATCTGAATCTTTCCTGCCTAGAAGATGCTAAACCAATCATTAGTTCGAGTACAGCGGTTCCTTTCCTGATCCAGCTGCTTACTAGTAATGACGAATCCCAAACCAAGCTCGATGCACTTCATACCCTTTATAACCTTTCTACCACACCTTCCATCATTCCTGTTCTTCTTTCTGCTGGTATTGTTGGCGGACTTCAATCCTTCCTCGCATCACCTAGTGACAGCATGTGGATAGAGACTTCCTTAGCTATCTTAATGAACTTAGCTTCAAGCAAGTTAGGGATAGAAGAAATAACTTCAGCCCCGGAGCTTATAAGTGGATTAGCAGCCATCGTTGATGCTGGGGAACGTGCTGAGCAGGAGCAAGCGGTATCATGCTTGTTGGTTTTGTGCAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTTATTCCGGGATTGGTTGCGATTACAGTAAACGGGACTTCGAGAGGGAAAGTAAAAGCACAAAAACTTCTGATGTTGTTTAGAGAGCAGAGGCAAAAAGATACCGATATCACTCAACAGCGAGATGGAAATAGTGACACAGCCATGGCTGCTCCAGATCCCAAGCCACTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2304 42.1 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVQAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDNDSQSGSTPCSPTVRCSLEDNGLAANGQVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIASWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRFVDNVGSNTLKEVKVVPLEESGTIKDAEGNEADDNTYMEESSDFITLESCVNFMAVLTAEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMDFLTLALIEENSDAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTSNDESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFLASPSDSMWIETSLAILMNLASSKLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLVLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDITQQRDGNSDTAMAAPDPKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4098358 4103398 - MELO3C011882.2.1 Cme10g00643 339529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00643 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 CDD RING-Ubox_PUB 284 326 IPR045210 -
Cme10g00643 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cme10g00643 767 MobiDBLite consensus disorder prediction 717 738 - -
Cme10g00643 767 SUPERFAMILY RING/U-box 274 355 - -
Cme10g00643 767 Gene3D - 405 724 IPR011989 -
Cme10g00643 767 SMART arm_5 506 544 IPR000225 GO:0005515
Cme10g00643 767 SMART arm_5 545 586 IPR000225 GO:0005515
Cme10g00643 767 SMART arm_5 460 504 IPR000225 GO:0005515
Cme10g00643 767 SUPERFAMILY ARM repeat 440 694 IPR016024 -
Cme10g00643 767 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 PANTHER U BOX DOMAIN-CONTAINING 1 726 - -
Cme10g00643 767 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01660 Cme-Chr7:22259117 Cme10g00643 Cme-Chr10:4098358 1.20E-72 dispersed
Cme10g00643 Cme-Chr10:4098358 Cme11g01284 Cme-Chr11:19590109 5.81E-48 dispersed
Cme10g00643 Cme-Chr10:4098358 Cme03g02175 Cme-Chr3:28801416 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00643 - - csv:101210079 1474.53