Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00643 ATGGACGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTACATGGAGAAATGTACAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATCCAGGCTTTATGTTCGTTACATGTAGCTCTTGAGAAGGCTAAGAACACCCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCAATAACTGGAGATGCTGTTCAAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAGTTGGTGATGATATTATTGCATTACTCTTGCAAGAACGAAAATTTGATGATTCCAATGGCCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACAAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATAGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGGCAGATGACAATGACTCACAGAGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGATAATGGACTTGCAGCGAATGGTCAAGTCTTCGAACATCAGCTTTCAAAGCTTAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCCGGGCAGATGCCTCTTCCACCTGAGGAGTTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACTCAACAGAGACTCTCCCACCTGTCTTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAGTTGGTGTGAACATAACGGAGTTCCAATCCTGGATGGCCCACCAAAGTCGCTTGATCTCAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAAAATCACGATTTGTGGATAATGTTGGCTCTAACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGATGCTGAAGGAAATGAAGCAGATGATAATACGTACATGGAGGAGTCATCAGATTTTATTACACTTGAAAGTTGTGTAAATTTTATGGCAGTATTGACTGCAGAGGGAGATTTGAGAAAAAAATGTAAGGTTGTGGAGCAAATAAGACTTTCATTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGACTTCCTAACTTTAGCTCTTATTGAAGAAAATAGTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCAGTCAACAACAACAGAAACAGGGAAATGATGATAGCGGCAGGCGTAATCTCATTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCTCTATATCTGAATCTTTCCTGCCTAGAAGATGCTAAACCAATCATTAGTTCGAGTACAGCGGTTCCTTTCCTGATCCAGCTGCTTACTAGTAATGACGAATCCCAAACCAAGCTCGATGCACTTCATACCCTTTATAACCTTTCTACCACACCTTCCATCATTCCTGTTCTTCTTTCTGCTGGTATTGTTGGCGGACTTCAATCCTTCCTCGCATCACCTAGTGACAGCATGTGGATAGAGACTTCCTTAGCTATCTTAATGAACTTAGCTTCAAGCAAGTTAGGGATAGAAGAAATAACTTCAGCCCCGGAGCTTATAAGTGGATTAGCAGCCATCGTTGATGCTGGGGAACGTGCTGAGCAGGAGCAAGCGGTATCATGCTTGTTGGTTTTGTGCAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTTATTCCGGGATTGGTTGCGATTACAGTAAACGGGACTTCGAGAGGGAAAGTAAAAGCACAAAAACTTCTGATGTTGTTTAGAGAGCAGAGGCAAAAAGATACCGATATCACTCAACAGCGAGATGGAAATAGTGACACAGCCATGGCTGCTCCAGATCCCAAGCCACTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTATACCAATGTTGA 2304 42.1 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVQAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELADDNDSQSGSTPCSPTVRCSLEDNGLAANGQVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIASWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRFVDNVGSNTLKEVKVVPLEESGTIKDAEGNEADDNTYMEESSDFITLESCVNFMAVLTAEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMDFLTLALIEENSDAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTSNDESQTKLDALHTLYNLSTTPSIIPVLLSAGIVGGLQSFLASPSDSMWIETSLAILMNLASSKLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLVLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDITQQRDGNSDTAMAAPDPKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4098358 4103398 - MELO3C011882.2.1 Cme10g00643 339529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00643 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 CDD RING-Ubox_PUB 284 326 IPR045210 -
Cme10g00643 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cme10g00643 767 MobiDBLite consensus disorder prediction 717 738 - -
Cme10g00643 767 SUPERFAMILY RING/U-box 274 355 - -
Cme10g00643 767 Gene3D - 405 724 IPR011989 -
Cme10g00643 767 SMART arm_5 506 544 IPR000225 GO:0005515
Cme10g00643 767 SMART arm_5 545 586 IPR000225 GO:0005515
Cme10g00643 767 SMART arm_5 460 504 IPR000225 GO:0005515
Cme10g00643 767 SUPERFAMILY ARM repeat 440 694 IPR016024 -
Cme10g00643 767 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cme10g00643 767 PANTHER U BOX DOMAIN-CONTAINING 1 726 - -
Cme10g00643 767 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 726 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00643 - - - csv:101210079 1474.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01660 Cme-Chr7:22259117 Cme10g00643 Cme-Chr10:4098358 1.20E-72 dispersed
Cme10g00643 Cme-Chr10:4098358 Cme11g01284 Cme-Chr11:19590109 5.81E-48 dispersed
Cme10g00643 Cme-Chr10:4098358 Cme03g02175 Cme-Chr3:28801416 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1184 Blo01g00365 Blo16g01194 . . . Bpe10g00785 . Bma15g00238 Cmo04g01920 Cmo18g00698 . Cma18g00710 . Car18g00655 Sed06g1738 Cpe09g00579 Cpe01g01608 Bhi07g01900 Tan04g0075 Cmetu10g0234 Lac13g0067 Hepe10g0096 . . . . . . . . . Cone13ag1136 Cone19ag1117 Cone8ag0740 . Lsi04g00666 . . Cme10g00643 Blo06g00829 . . . . . Bma01g00018 Bma06g00574 . . . Cma04g01823 . Car04g01836 . . . . . . . . . . Cla11g01354 Cam11g1412 Cec11g1438 Cco11g1436 Clacu11g1569 Cmu11g1389 Cre11g1810 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010076 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 4 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00643 Cme_Chr10 FPKM 5.892231 7.146265 9.14073 4.324638 13.941168 9.672851 11.226998 5.608356 7.230796 4.308941