Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00646 ATGGTGATGGTGATGGTGGAGAAGAAGAAACTGTTGTTTCTTCTCTTGCTTTTTAACTTTCACTTCACTTTAAGGGTTTTAGCCCTCTCACCGGATGGTCTCTCGCTTCTTTCTCTCAAGTCAGCGGTCGACCAGTCGCCGGATACCTCTGTTTTCTCCGATTGGAACGAGAATGACTCCACGCCTTGCGGATGGTCTGGCATTTCTTGTATGAATGTTTCTGGTGACTCGCGAGTCGTTGGAATTGCTCTTTCTGGTAAGAATCTCCATGGCTACATTCCTTCTGAACTTGGTTCGCTTGTGTATCTGCGCCGATTGAACCTCCATAACAACAATCTCTACGGTTCCATACCTGAACAGCTGTTTAATGCTACCTCATTGCATAGCCTGTTTCTCTACAGTAATAATCTCTCCGGTTCTTTTCCTCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCCAACAATTCCCTAGCTGGACCAGTACCCGACGAATTGAGAAATTGTAAGCAATTGCAGCGATTAATACTCGCTAGAAACCAATTCGACGGAGAAATTCCGTCTGGTGTTTGGTCTGGGATGGATAATTTAGTTCAACTCGATCTCTCTTCCAACGATTTCAGTGGATCGATTCCGGAGGATCTAGGGGAACTGAAGACACTCTCCGGTACGCTCAACCTCTCCTTCAATCATTTATCAGGTAAAATCCCGAAAACTCTAGGAGATTTGCCGGTGACGGTGAGTTTCGACCTCCGGAGCAACAACTTAAGCGGAAGTATACCACAAACGGGTTCATTTGCGAATCAGGGACCGACTGCATTTCTCAACAATCCTGAGCTATGCGGATTTCCTCTTCAGAAATCTTGTGAGAATTCGGAACGTGGCTCACCGGGAAATCCCGATTCTAAACCATCTTACATTACCCCTAGAAAAGGATTGAGCGCCGGATTAATCATTCTCATCTCCGCGGCCGACGCCGCCGGAGTAGCGTTCATCGGCTTGGTAATAGTTTATGTATACTGGCGAAGGAAGGACAGTTCAAACGGCTGTAGCTGTACGTCGAAAAGAAAATTCGGCGGGAATCAGAAAGACAATCTCTGCAATTTTCCTTGTATGAATGGGAATGATAAGAACGAGGAATCTGAAATGGAGGAACCGGAGAACAGCGAAAGAAGCAGAGAAGAAGGAGGGCTTGTGGCCGTAGACAAAGGGTTTACGTTCGAGCTCGATGAGCTGTTGAGAGCGTCGGCATATGTGCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTTCTCGGAAATGGGATTCCGGTGGCTGTACGGCGGTTGGGGGAAGGGGGAGAACAGAGGTATAAGGAGTTCGCGGCGGAGGTACAGGCCATTGGAAGGGTAAAACATCCGAATATCGTGAAATTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGACTTTATCTCCAATGGAAACTTGGCCTCTGCTCTTCGCGGAAAAAACGGGCAGCCATCTTCAAGCCTTTCATGGTCAACAAGACTACGAATAACCAAAGGAACCGCGAGAGGATTAGCCTATCTCCATGAATGTAGCCCAAGGAAATTCGTCCATGGCGACATCAAACCCTCCAACATCCTCCTCGACAACGATTTCCATCCCCACATCTCCGACTTCGGCCTCAACCGTTTAATCAGCATCACCGGCAATAACCCCTCCTCCTCCGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAATCCGTCCAAACCGACCGCACCAACAACTACTGCGCGCCGGAGGCCCGAGCCCCCGGCGGCCGCCCCACCCAAAAATGGGACGTATATTCCTTCGGCGTCATGGTCCTCGAATTACTCACCGGAAAGTCGCCGGAGCTTTCGCCGAACACGTCGACTTCTTTGGAAATTCCAGATTTGGTGAGATGGGTTAGGAAAGGATTTGAAGAAGCAAAGCCATTGTCGGATTTGGTTGATCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTGCTCGCTGTATTCCACGTGGCGCTCGCTTGTACAGAGAGCGATCCGGAGGTTCGGCCCAGAATGAAGACGGTGTCGGAGAGTTTTGATAGGATTGGATCGTGA 2148 49.12 MVMVMVEKKKLLFLLLLFNFHFTLRVLALSPDGLSLLSLKSAVDQSPDTSVFSDWNENDSTPCGWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNLYGSIPEQLFNATSLHSLFLYSNNLSGSFPPSICNIPRLQNLDLSNNSLAGPVPDELRNCKQLQRLILARNQFDGEIPSGVWSGMDNLVQLDLSSNDFSGSIPEDLGELKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPELCGFPLQKSCENSERGSPGNPDSKPSYITPRKGLSAGLIILISAADAAGVAFIGLVIVYVYWRRKDSSNGCSCTSKRKFGGNQKDNLCNFPCMNGNDKNEESEMEEPENSERSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQPSSSLSWSTRLRITKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIGS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4122792 4126934 + MELO3C011879.2.1 Cme10g00646 339532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00646 715 Gene3D Ribonuclease Inhibitor 30 198 IPR032675 -
Cme10g00646 715 ProSiteProfiles Protein kinase domain profile. 417 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00646 715 Gene3D Phosphorylase Kinase; domain 1 409 492 - -
Cme10g00646 715 Gene3D Transferase(Phosphotransferase) domain 1 493 715 - -
Cme10g00646 715 SUPERFAMILY L domain-like 34 289 - -
Cme10g00646 715 SMART serkin_6 421 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00646 715 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cme10g00646 715 SUPERFAMILY Protein kinase-like (PK-like) 422 707 IPR011009 -
Cme10g00646 715 Gene3D Ribonuclease Inhibitor 199 290 IPR032675 -
Cme10g00646 715 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 714 - -
Cme10g00646 715 SMART LRR_typ_2 100 124 IPR003591 -
Cme10g00646 715 SMART LRR_typ_2 197 221 IPR003591 -
Cme10g00646 715 SMART LRR_typ_2 173 196 IPR003591 -
Cme10g00646 715 SMART LRR_typ_2 148 172 IPR003591 -
Cme10g00646 715 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
Cme10g00646 715 CDD STKc_IRAK 423 713 - -
Cme10g00646 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Cme10g00646 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 714 - -
Cme10g00646 715 Pfam Protein kinase domain 422 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01532 Cme-Chr8:14833270 Cme10g00646 Cme-Chr10:4122792 6.65E-167 dispersed
Cme09g01494 Cme-Chr9:20128293 Cme10g00646 Cme-Chr10:4122792 1.60E-68 dispersed
Cme10g00230 Cme-Chr10:1531870 Cme10g00646 Cme-Chr10:4122792 0 dispersed
Cme10g00646 Cme-Chr10:4122792 Cme11g00706 Cme-Chr11:8397833 4.35E-122 dispersed
Cme10g00646 Cme-Chr10:4122792 Cme09g01420 Cme-Chr9:19407451 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65202 PF00069 Pkinase 1.30E-32 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00646 - - csv:101220493 1366.67