Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00672 AGGAAGCCCACTTGCGCTCTCATTCACGCTTCGAAACGGCGTTCGTACTCCCCATTTACACGACGAGCATCGCCGTTCCCGACTGAAGAAAAGATTGACGCAGCAGCTATTCCGAGTTCACAACAAGATCTCTCCGCCATCGTCTTTCTCATACGCCGCAACATGTCTCAGGTTGATAGCAGGAATTCCTCTGCAGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGTCCTAGTTGTGGGAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAACTGTACTCAGCCACGTCCTGCTGATCATAATTCGAAATCTGCTGCCAAGCCCGTTCAAGCTCCTCAGGGTTACTCCTATTCTGCTCCTTACATGGGTTCGGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCTTATGGTTCTTCTATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATACCATTACAACTATGGCAGCCGGTTTTCTGCAGGCAGCCCCTACAGACCGTTGCATTTATCTGGGCCTGCACCTTATTCGAGTGGATCTATGATGGGAAACAGTGCAGTGTATGGTATTCCCCCGATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCCAGGCCAGGTTTTTTTCCAGATGAAATGTCTCAGAAGAAGGGTGCAGACACTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAGCCTGGGTCACAGGCTTCCAAAAATGACAAAAGCTCTAAACAAAAGACTCCAGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAATTATCCATTCAGAACCAAGTGCAATAGACAAAATTGTGGAGCAGACAAGCCAGCGGAATCAGAGAAATCCCCATCACCGGCACAGGAAGAAAATGATCAGTGA 1020 47.35 RKPTCALIHASKRRSYSPFTRRASPFPTEEKIDAAAIPSSQQDLSAIVFLIRRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSMMGNSAVYGIPPIMDRYGMALPMGPGAMGPRPGFFPDEMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQASKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAQEENDQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4274520 4278478 + MELO3C011859.2.1 Cme10g00672 339558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00672 339 SUPERFAMILY Ran binding protein zinc finger-like 287 324 IPR036443 -
Cme10g00672 339 SUPERFAMILY Ran binding protein zinc finger-like 71 108 IPR036443 -
Cme10g00672 339 Pfam Zn-finger in Ran binding protein and others 248 277 IPR001876 -
Cme10g00672 339 Pfam Zn-finger in Ran binding protein and others 293 323 IPR001876 -
Cme10g00672 339 Pfam Zn-finger in Ran binding protein and others 76 98 IPR001876 -
Cme10g00672 339 MobiDBLite consensus disorder prediction 274 302 - -
Cme10g00672 339 PANTHER ZINC FINGER PROTEIN 59 330 - -
Cme10g00672 339 SUPERFAMILY Ran binding protein zinc finger-like 242 279 IPR036443 -
Cme10g00672 339 PANTHER OS08G0521400 PROTEIN 59 330 - -
Cme10g00672 339 MobiDBLite consensus disorder prediction 58 78 - -
Cme10g00672 339 Gene3D - 68 108 - -
Cme10g00672 339 Gene3D - 285 325 - -
Cme10g00672 339 Gene3D - 238 279 - -
Cme10g00672 339 SMART zf_4 78 104 IPR001876 -
Cme10g00672 339 SMART zf_4 249 275 IPR001876 -
Cme10g00672 339 SMART zf_4 295 321 IPR001876 -
Cme10g00672 339 MobiDBLite consensus disorder prediction 318 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00672 - - - csv:101214779 595.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01444 Cme-Chr2:21064223 Cme10g00672 Cme-Chr10:4274520 3.53E-06 dispersed
Cme08g00918 Cme-Chr8:6044095 Cme10g00672 Cme-Chr10:4274520 4.41E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00672 Cme_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0