Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00699 ATGGAAACTCACTTTAATCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGTTTTCTTTTGAAATGGGTTACAGAGGATACATTAAAGGCATTGAAGGAGAAAGCAAAACAGTCAGAGGCACCAGAGCCTGAACCAGAACCCACCACCGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCTGGTGCTTTGAGGAAACATTCTCATATTCATGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGCGATCCCATATGAAAACGCATTCACAAGAGAACTATCATATCTGTCCATACGCTGACTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACGTCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTTAAATATACACCACCTTCCGAGAAGCAAACGAAGGTTTCTAAACCTTCAGGAGGAGCTTATGCTTCTGCATCATCTGATCGTCCATATGCTTGCCCCTACGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTTCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCAACATAATGGGGAAAATGAGGTAGAAGCCAGTGATCAAGATGTCTATGGCGGAAAACGGGCAAATGTTAAAAACCAGAAACAGAACAAACCTAAACCAAACTTGAAGTTACCGCCATCAAAAATATCACAACGGAAAGGCACAACTCCATCACCTGCCCCAATGAGTGTAGTTAAAAAATCATGGCCGGTAAAAGAAGAAAACTACGAGGAAGAAGATAGCGAAGAAACGGAGGAGGAGGACCGTGAGAACGTGGAGGAGGGATGGAGATATGCTGAAAACGAAGAAGATGATGAGGAAACAGAATATGAAGATTAA 1113 42.14 METHFNHNLFDRRPIVKNKSPPVKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAQHNGENEVEASDQDVYGGKRANVKNQKQNKPKPNLKLPPSKISQRKGTTPSPAPMSVVKKSWPVKEENYEEEDSEETEEEDRENVEEGWRYAENEEDDEETEYED 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4394321 4398437 - MELO3C011837.2.1 Cme10g00699 339585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00699 370 MobiDBLite consensus disorder prediction 306 320 - -
Cme10g00699 370 MobiDBLite consensus disorder prediction 201 227 - -
Cme10g00699 370 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cme10g00699 370 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cme10g00699 370 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Cme10g00699 370 SMART c2h2final6 136 160 IPR013087 -
Cme10g00699 370 SMART c2h2final6 77 101 IPR013087 -
Cme10g00699 370 SMART c2h2final6 166 190 IPR013087 -
Cme10g00699 370 SMART c2h2final6 229 254 IPR013087 -
Cme10g00699 370 SMART c2h2final6 106 130 IPR013087 -
Cme10g00699 370 Gene3D Classic Zinc Finger 103 133 - -
Cme10g00699 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Cme10g00699 370 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cme10g00699 370 Gene3D Classic Zinc Finger 77 102 - -
Cme10g00699 370 Gene3D Classic Zinc Finger 134 161 - -
Cme10g00699 370 PANTHER BNAA03G13270D PROTEIN 4 369 - -
Cme10g00699 370 MobiDBLite consensus disorder prediction 333 348 - -
Cme10g00699 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cme10g00699 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cme10g00699 370 Gene3D Classic Zinc Finger 202 272 - -
Cme10g00699 370 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 369 - -
Cme10g00699 370 Gene3D Classic Zinc Finger 162 191 - -
Cme10g00699 370 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cme10g00699 370 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Cme10g00699 370 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Cme10g00699 370 MobiDBLite consensus disorder prediction 206 220 - -
Cme10g00699 370 MobiDBLite consensus disorder prediction 355 370 - -
Cme10g00699 370 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cme10g00699 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cme10g00699 370 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Cme10g00699 370 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Cme10g00699 370 MobiDBLite consensus disorder prediction 257 370 - -
Cme10g00699 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cme10g00699 370 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00016 Cme-Chr10:185262 Cme10g00699 Cme-Chr10:4394321 3.18E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42065 PF00096 zf-C2H2 0.0045 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00699 - - csv:101218905 675.241