Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00701 ATGGCTTCTACCTCTTCCTCTGCTTCCACCCACCAACTCGACGCATCGCTCGTCATCGCCACCAGATCAGACACTACTGCCGCCGCCGCCGATCCTTCTCCTCGATCTACCTCTACCACCAACGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAAGTCGAAGGTCGTGGCCGTCGCATCCGTATGCCGGCCACTTGTGCTGCTAGGGTTTTTCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCCGCCACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCAGCTCAACTTAATGACCGCTGATCAAATCGGCGAAGGGTTGCCTAGCGGCGGAGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTTAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGAGCGATCTGCAACTAGAGAAACAACAACAACAACAACCATCAGCGTCTTCTTCATCGGGACTACTCCGACCTGGAGCCGCGATGTGGGCGGTGGCGACACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCTGGAGGCGGCAGCGGCGGCGGCGGCGGTGGTGGTGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCGGCGGCGGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCGATGTTGATGCAACAAGCGACGGGAGGCGGCGGTGGCGGTGGTTTGGGGGTGTCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCAGGAAGTGGTTTCAAATATCAATTCAGATAA 1215 52.67 MASTSSSASTHQLDASLVIATRSDTTAAAADPSPRSTSTTNANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGEGLPSGGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKSDLQLEKQQQQQPSASSSSGLLRPGAAMWAVATPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGSGGGGGGGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGGQLQLGSMLMQQATGGGGGGGLGVSETNLGMLAALNAAYNSRSGSGFKYQFR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4410767 4411981 + MELO3C011835.2.1 Cme10g00701 339587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00701 404 MobiDBLite consensus disorder prediction 44 59 - -
Cme10g00701 404 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
Cme10g00701 404 MobiDBLite consensus disorder prediction 286 309 - -
Cme10g00701 404 PANTHER TRANSCRIPTION FACTOR TCP8 3 396 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 232 251 - -
Cme10g00701 404 Pfam TCP family transcription factor 46 177 IPR017887 -
Cme10g00701 404 MobiDBLite consensus disorder prediction 24 43 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 24 59 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 208 252 - -
Cme10g00701 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 396 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00701 - - - csv:101222378 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01890 Cme-Chr2:25419111 Cme10g00701 Cme-Chr10:4410767 2.08E-46 dispersed
Cme06g00952 Cme-Chr6:6767274 Cme10g00701 Cme-Chr10:4410767 6.96E-34 dispersed
Cme10g00425 Cme-Chr10:2683489 Cme10g00701 Cme-Chr10:4410767 5.29E-47 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme10g00786 Cme-Chr10:5105118 9.31E-38 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme12g02008 Cme-Chr12:25710988 2.77E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02231 . 45 265 TCP Transcription Factor Family AT5G23280 61.8 1.3e-63 240.0
Cme10g00786 . 93 315 TCP Transcription Factor Family AT5G23280 59.6 5.3e-60 228.0
Cme11g02537 . 65 328 TCP Transcription Factor Family AT2G45680 53.8 1.6e-65 246.9
Cme10g00425 . 71 165 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Cme12g02008 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Cme10g00701 . 46 165 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Cme10g00701 . 46 147 TCP Transcription Factor Family AT1G69690 78.8 2.8e-37 152.9
Cme06g01771 . 8 241 TCP Transcription Factor Family AT3G27010 58.2 2.8e-58 222.6
Cme11g02340 . 36 270 TCP Transcription Factor Family AT3G27010 52.0 3.5e-53 205.7
Cme10g00786 . 63 313 TCP Transcription Factor Family AT5G08330 55.4 9.9e-64 240.4
Cme06g02231 . 31 264 TCP Transcription Factor Family AT5G08330 59.1 1.3e-60 229.9
Cme02g01824 CCT 49 148 TCP Transcription Factor Family AT5G60970 76.2 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42066 PF03634 TCP 9.30E-39 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00701 Cme_Chr10 FPKM 0.865979 0.0 0.0 0.0 3.150819 2.454562 0.0 0.0 0.0 0.0