Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00701 ATGGCTTCTACCTCTTCCTCTGCTTCCACCCACCAACTCGACGCATCGCTCGTCATCGCCACCAGATCAGACACTACTGCCGCCGCCGCCGATCCTTCTCCTCGATCTACCTCTACCACCAACGCTAACAAGCGTTCTACTAAAGATCGTCACACGAAAGTCGAAGGTCGTGGCCGTCGCATCCGTATGCCGGCCACTTGTGCTGCTAGGGTTTTTCAATTGACGCGTGAATTAGGCCATAAATCCGACGGTGAGACTATTGAGTGGCTTCTTCAACAAGCTGAGCCGGCTATAATTGCCGCCACTGGTACTGGTACAATTCCGGCTAATTTCTCCTCCTTGAATATCTCGATTCGTAGTAGTGGATCTACTCTCTCTGCTCCTCCTTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTGCTTTGGCTCTCGCTCATCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCACCAGCAACAGCAACAACAACAGCATCAGCTCAACTTAATGACCGCTGATCAAATCGGCGAAGGGTTGCCTAGCGGCGGAGGAGGAGAATCGACGGATAACTATATGAGAAAACGATTTAGAGAGGATTTGTTTAAAGAAGATACACAATCTCCAGGGGAAAGTAGTGGAGGCGGTGGATCTCCTAAAGCAATGAAGAGCGATCTGCAACTAGAGAAACAACAACAACAACAACCATCAGCGTCTTCTTCATCGGGACTACTCCGACCTGGAGCCGCGATGTGGGCGGTGGCGACACCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGGCAGGTTCCGGCGGGGGAAATGTAGGGAATTCTTCTGGAGGCGGCAGCGGCGGCGGCGGCGGTGGTGGTGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACGAGTGGTAACACATTGCAGGCGCCGTTGCATTTGATGCCGAGATTTAATATACCTGGAGGTGTGGAAATTCAGGCAGCGGCGGCGGGAGGAGGAAGAGGCGGCGGTGGGCAATTGCAATTGGGTTCGATGTTGATGCAACAAGCGACGGGAGGCGGCGGTGGCGGTGGTTTGGGGGTGTCGGAGACGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATAATTCAAGATCAGGAAGTGGTTTCAAATATCAATTCAGATAA 1215 52.67 MASTSSSASTHQLDASLVIATRSDTTAAAADPSPRSTSTTNANKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGAALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGEGLPSGGGGESTDNYMRKRFREDLFKEDTQSPGESSGGGGSPKAMKSDLQLEKQQQQQPSASSSSGLLRPGAAMWAVATPGPSSGASNTFWMLPVTAGSGGGNVGNSSGGGSGGGGGGGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGGQLQLGSMLMQQATGGGGGGGLGVSETNLGMLAALNAAYNSRSGSGFKYQFR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4410767 4411981 + MELO3C011835.2.1 Cme10g00701 339587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00701 404 MobiDBLite consensus disorder prediction 44 59 - -
Cme10g00701 404 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
Cme10g00701 404 MobiDBLite consensus disorder prediction 286 309 - -
Cme10g00701 404 PANTHER TRANSCRIPTION FACTOR TCP8 3 396 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 232 251 - -
Cme10g00701 404 Pfam TCP family transcription factor 46 177 IPR017887 -
Cme10g00701 404 MobiDBLite consensus disorder prediction 24 43 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 24 59 - -
Cme10g00701 404 MobiDBLite consensus disorder prediction 208 252 - -
Cme10g00701 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 396 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01890 Cme-Chr2:25419111 Cme10g00701 Cme-Chr10:4410767 2.08E-46 dispersed
Cme06g00952 Cme-Chr6:6767274 Cme10g00701 Cme-Chr10:4410767 6.96E-34 dispersed
Cme10g00425 Cme-Chr10:2683489 Cme10g00701 Cme-Chr10:4410767 5.29E-47 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme10g00786 Cme-Chr10:5105118 9.31E-38 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme12g02008 Cme-Chr12:25710988 2.77E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42066 PF03634 TCP 9.30E-39 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00701 - - csv:101222378 557.755