Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00786 CTTCCTCTTCCTCTTCCTCTTCCTCTTCCTTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCTCTCAGCTTCAGCAATGGCAGCCACTACTACCTCCTCCTTCTAACCCTTCTTCAATCTCACTCCTAATTACTCGACCCCCCCTCCCCTCCCCTCCCCTCCCATCTTCCTTCTTCATGTCTAATTCTGATCATACTAATGGCGTCTCCAATGCCGCCGCCATCGACTCTCACAAGAATCAGTCCTCTTCCAATGGAGCCCTCGCTGTTAAAAAGCCTCCTTCTAAGGATCGTCATAGTAAGGTTGATGGTCGTGGCCGTCGTATCCGTATGCCCATCATCTGCGCTGCTCGTGTCTTCCAGCTGACTCGTGAACTTGGTCATAAGTCCGACGGTCAAACCATCGAGTGGCTTCTTCGTCAAGCCGAGCCTTCTATTATTGCTGCTACTGGTACTGGTACTACTCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACTACTTCTACTCTTTCCCTCTCACGTCCTCAAGCTCTTTCCGGTCCCACGCCGTTTATTCTTGGCAAGCGTGTTAGGTCCGACGATGATGCTAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACCGGGCCAGGTGGGTATTGGGCGATTCCGGCTAGACCCGATTATGGGCAGGTTTGGAGTTTTGCTGCCGCGGCTCCGTCGGAGATGGTGGTTCAACAGGGGGGGATTTCTCAACAAGCGTCGTTGTTTGCTCAACAGCAGCAGCCGATTAGAGAGGCGTCCGCGGCCAGAGTGGGGAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGTGGAGGTGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 948 53.48 LPLPLPLPLPSLSLSLSPSLSSQLQQWQPLLPPPSNPSSISLLITRPPLPSPPLPSSFFMSNSDHTNGVSNAAAIDSHKNQSSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDAKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQQGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5105118 5106803 - MELO3C011754.2.1 Cme10g00786 339672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00786 315 MobiDBLite consensus disorder prediction 77 106 - -
Cme10g00786 315 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Cme10g00786 315 Pfam TCP family transcription factor 95 180 IPR017887 -
Cme10g00786 315 MobiDBLite consensus disorder prediction 168 194 - -
Cme10g00786 315 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 60 312 IPR005333 GO:0003700
Cme10g00786 315 MobiDBLite consensus disorder prediction 92 106 - -
Cme10g00786 315 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 60 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02231 Cme-Chr6:29167155 Cme10g00786 Cme-Chr10:5105118 1.89E-94 dispersed
Cme10g00701 Cme-Chr10:4410767 Cme10g00786 Cme-Chr10:5105118 9.31E-38 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme12g02008 Cme-Chr12:25710988 2.63E-37 dispersed
Cme10g00786 Cme-Chr10:5105118 Cme10g00425 Cme-Chr10:2683489 9.63E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42081 PF03634 TCP 2.40E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00786 K16221 - csv:101206050 419.468