Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00811 ATGGCTTACGTGGCCAAATGTACTAATAATTCTCCTCCAACTCCCATCAGTTTTAACAATAATCCAAATAATCCTTTATCTTTCTCCCCAATGTCTTCTTCCCCACCCACTTCTCAACCGTCCTCTCCTCCTCCCCCTCCGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGTCGCCGCTGTGTCGAGAAATGCGTTTTGGCTCCTTATTTCCCTCCCACTGACCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGTTAGATTACAGTTTAGGGAGCTTCCAGAGTGTCAAAGAACGGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTGAGAGATCCAGTTTACGGTAGTGCAGGCGCAATTTGCCAACTGCAAAAGCAAGTGAGCGAACTACAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAATATGCAGCAACAACAAGCCAACTTACTAGCCTTAATTTGCATGGAAATGAGACAATCACCGGAGCCTGTTTGGCAGCCACAACTCGTGGACACTACATGCTTCCTCGATGACGCCACCCTCAGCTCACCTTGGGAGCCACTCTGGACGTGA 630 49.21 MAYVAKCTNNSPPTPISFNNNPNNPLSFSPMSSSPPTSQPSSPPPPPVVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQVRLQFRELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWQPQLVDTTCFLDDATLSSPWEPLWT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5318417 5319720 - MELO3C011730.2.1 Cme10g00811 339697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00811 209 Pfam Lateral organ boundaries (LOB) domain 52 155 IPR004883 -
Cme10g00811 209 ProSiteProfiles LOB domain profile. 51 158 IPR004883 -
Cme10g00811 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 33 191 - -
Cme10g00811 209 Coils Coil 137 171 - -
Cme10g00811 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 191 - -
Cme10g00811 209 MobiDBLite consensus disorder prediction 7 35 - -
Cme10g00811 209 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00811 Cme-Chr10:5318417 Cme11g01769 Cme-Chr11:25921359 5.96E-74 dispersed
Cme03g01752 Cme-Chr3:26066877 Cme10g00811 Cme-Chr10:5318417 1.90E-09 transposed
Cme10g00811 Cme-Chr10:5318417 Cme09g00609 Cme-Chr9:6373633 3.32E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42083 PF03195 LOB 1.20E-36 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00811 - - csv:101204854 307.375