Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme10g00818 | ATGGCCGACCCTCCCACCAGTCCTCCTGGCGGCAGCCACGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTTCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGAAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTTCCAGTGTGATGCTAAAGGATCTTCAAGGGGTGGTGATGAATCTGCTAAGAGAGATGCAGTTGGAGTCTTGTCTGGTCAAAATGTGCAGCAATATATGCCGCCGGGAGCATTGGCCTACATTAACACTCAAGCTATATTTGGGGACAAGACTGTAGACGACTGGCAATGA | 525 | 46.1 | MADPPTSPPGGSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYREFQCDAKGSSRGGDESAKRDAVGVLSGQNVQQYMPPGALAYINTQAIFGDKTVDDWQ | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5367123 | 5371544 | - | MELO3C011726.2.1 | Cme10g00818 | 339704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme10g00818 | 174 | Gene3D | Histone, subunit A | 22 | 149 | IPR009072 | GO:0046982 | |
Cme10g00818 | 174 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 33 | 97 | IPR003958 | - | |
Cme10g00818 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 80 | 98 | - | - | |
Cme10g00818 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 99 | 117 | - | - | |
Cme10g00818 | 174 | PRINTS | CCAAT-binding transcription factor subunit A signature | 61 | 79 | - | - | |
Cme10g00818 | 174 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 64 | 80 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cme10g00818 | 174 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 155 | - | - | |
Cme10g00818 | 174 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cme10g00818 | 174 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 155 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cme10g00818 | 174 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
Cme10g00818 | 174 | SUPERFAMILY | Histone-fold | 30 | 132 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g00818 | Cme-Chr10:5367123 | Cme02g00096 | Cme-Chr2:726817 | 1.80E-28 | dispersed | |
Cme01g02349 | Cme-Chr1:31831207 | Cme10g00818 | Cme-Chr10:5367123 | 8.04E-48 | transposed | |
Cme02g01777 | Cme-Chr2:24637859 | Cme10g00818 | Cme-Chr10:5367123 | 1.09E-18 | transposed | |
Cme05g00256 | Cme-Chr5:1882018 | Cme10g00818 | Cme-Chr10:5367123 | 2.34E-09 | transposed | |
Cme11g00968 | Cme-Chr11:13736069 | Cme10g00818 | Cme-Chr10:5367123 | 5.71E-61 | transposed | |
Cme10g00818 | Cme-Chr10:5367123 | Cme04g02561 | Cme-Chr4:31731751 | 1.22E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42084 | PF00808 | CBFD_NFYB_HMF | 4.20E-28 | CL0012 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme10g00818 | K08065 | - | csv:101223123 | 294.664 |