Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00818 ATGGCCGACCCTCCCACCAGTCCTCCTGGCGGCAGCCACGAAAGCGGCGGTGAACAAAGCCCTAACACTGCTGCTGCCGTTCGTGAACAAGATCGTTTTCTTCCCATCGCTAATATTAGTCGGATCATGAAGAAAGCTTTACCTGCTAATGGAAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGTGTTTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCTATGGCCACGTTGGGATTTGAGGAATATATTGATCCCCTTAAATCCTACCTTAATAGATACAGAGAGTTCCAGTGTGATGCTAAAGGATCTTCAAGGGGTGGTGATGAATCTGCTAAGAGAGATGCAGTTGGAGTCTTGTCTGGTCAAAATGTGCAGCAATATATGCCGCCGGGAGCATTGGCCTACATTAACACTCAAGCTATATTTGGGGACAAGACTGTAGACGACTGGCAATGA 525 46.1 MADPPTSPPGGSHESGGEQSPNTAAAVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLNRYREFQCDAKGSSRGGDESAKRDAVGVLSGQNVQQYMPPGALAYINTQAIFGDKTVDDWQ 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5367123 5371544 - MELO3C011726.2.1 Cme10g00818 339704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00818 174 Gene3D Histone, subunit A 22 149 IPR009072 GO:0046982
Cme10g00818 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Cme10g00818 174 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Cme10g00818 174 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Cme10g00818 174 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Cme10g00818 174 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme10g00818 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 155 - -
Cme10g00818 174 MobiDBLite consensus disorder prediction 1 26 - -
Cme10g00818 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme10g00818 174 MobiDBLite consensus disorder prediction 12 26 - -
Cme10g00818 174 SUPERFAMILY Histone-fold 30 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00818 Cme-Chr10:5367123 Cme02g00096 Cme-Chr2:726817 1.80E-28 dispersed
Cme01g02349 Cme-Chr1:31831207 Cme10g00818 Cme-Chr10:5367123 8.04E-48 transposed
Cme02g01777 Cme-Chr2:24637859 Cme10g00818 Cme-Chr10:5367123 1.09E-18 transposed
Cme05g00256 Cme-Chr5:1882018 Cme10g00818 Cme-Chr10:5367123 2.34E-09 transposed
Cme11g00968 Cme-Chr11:13736069 Cme10g00818 Cme-Chr10:5367123 5.71E-61 transposed
Cme10g00818 Cme-Chr10:5367123 Cme04g02561 Cme-Chr4:31731751 1.22E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42084 PF00808 CBFD_NFYB_HMF 4.20E-28 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00818 K08065 - csv:101223123 294.664