Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00822 ATGATGTTGGATCTCAACGATTCGATTACGAACCGCGACGAAACGGCCGCGAGTCGGATCGTAATGGAAGATTCCGAGACTTCAAATTCTTCCGTCGTTAATGCCACCGACGAGGTGTCCAACAGCAGAGACGAAGATTCCTCTGTTCTAATCTTCGATATTCTCAAAAGAGAAAGTTCCGGCGGCGGCAGTGGCGGCGGCGCGTCGTCGGAATTAGTGACTCAGACGCTTTTTCCAGTCGTCGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCTAGAACCCATTGGTTGAACTTGTCGTCGACGGCAGATTCCGGCGGCGGTGGTGGACCGCCGGAGTTGAGAATTGTACAGCAGAAACAACAGCAGGTGAGAAAGAGCCGCCGTGGACCACGCTCCCGGAGCTCGCAATACCGGGGAGTTACCTTTTACCGGCGAACCGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCACATGCTGCAGCAAGGGCTTACGATCGAGCGGCAATCAAGTTTAGAGGAGTTGATGCGGACATAAACTTCAGTATAAGTGATTATGACGAAGATATGAAACAAATGAAAAATCTAAGTAAAGAAGAGTTTGTCCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGCGGAGGTTCGAAGTTAAGAGGATTGTCTCTTCAAAAATATGGAAGATGGGAAAACCAAATGAGTCAAATTATTGGAAAGAATGGAATTGAGCAGAGGTCATACAAAGGGGATACGATGGTGGATTCAAACAATGGAGCTAATGGGCATAATCTTGATTTGAGCATCGGAGGAATTTTCAACTACCATTTTACTAATTCTCCTCAAAAGCTCAACATTGAGAGACCAAAGGTAATCCTCTTATTGGTTTCGTGTATAGAACTAAAGAATCTCGAGTAG 951 46.58 MMLDLNDSITNRDETAASRIVMEDSETSNSSVVNATDEVSNSRDEDSSVLIFDILKRESSGGGSGGGASSELVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGPPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFSISDYDEDMKQMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGDTMVDSNNGANGHNLDLSIGGIFNYHFTNSPQKLNIERPKVILLLVSCIELKNLE 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5397762 5401616 - MELO3C011722.2.1 Cme10g00822 339708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00822 316 MobiDBLite consensus disorder prediction 92 114 - -
Cme10g00822 316 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 297 - -
Cme10g00822 316 MobiDBLite consensus disorder prediction 16 38 - -
Cme10g00822 316 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Cme10g00822 316 MobiDBLite consensus disorder prediction 16 44 - -
Cme10g00822 316 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Cme10g00822 316 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Cme10g00822 316 CDD AP2 137 195 IPR001471 GO:0003700|GO:0006355
Cme10g00822 316 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 2 297 - -
Cme10g00822 316 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Cme10g00822 316 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00822 Cme-Chr10:5397762 Cme11g01754 Cme-Chr11:25705936 6.68E-82 dispersed
Cme10g00822 Cme-Chr10:5397762 Cme04g02563 Cme-Chr4:31757832 2.88E-75 wgd
Cme10g00822 Cme-Chr10:5397762 Cme08g02331 Cme-Chr8:30217408 4.34E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42085 PF00847 AP2 3.80E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00822 K09284 - csv:101204131 559.296