Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00828 ATGGGATGGTTTCTTTGTTCAGGAATTTCTAATAAGAAGGAAAAACATCAGCAGCAGCAAGTACACAGGAAGGACGATGATCCGATCCCATCAACTTCAGATGCAGAAAAATTGATGGTAAAGGCGACATATAATGGGAAGAACGATACTATGAAAGATGGAGGTGCTGATCAAATTGCAGGACAAACAATTACCTTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCTGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAGCTTGATCGAAATGGGCTACAAGGAAACAGGGAATTCCTTGTTGAAGTACTAATGTTGAGCCTACTTCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATTTACATGATCTCCCACCCGATAAAAAACGACTTGACTGGAATACGAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTGGAGTATTTGCATGACAAGGCTAATCCCCCAGTTATATATCGGGATCTGAAGTGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGTTATCTGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGTGATAACACTCATGTGTCCACGAGGGTGATGGGAACATATGGATACTGTGCTCCAGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGACGTTTATAGTTTTGGAGTTGTTCTACTTGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCTGCAGGGGAACATAATTTGGTGGCATGGGCACAACCCTTATTTAAAGACCGAAGGAAATTTTCCCAGATGGCGGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTGTATCAAGCACTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCACTTATTGCTGATGTTGTCACAGCTCTTACATACCTTGCCTCCCAAAAATACGACCCCGAAACCCAGCCAGTTCAAAGCGCTCGCAGTAGCTCATCCACACCTAGATCTTCTAGAAGAGAACTGTGA 1155 42.94 MGWFLCSGISNKKEKHQQQQVHRKDDDPIPSTSDAEKLMVKATYNGKNDTMKDGGADQIAGQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKYDPETQPVQSARSSSSTPRSSRREL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5472250 5476990 - MELO3C011717.2.1 Cme10g00828 339714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00828 384 PANTHER OS07G0668900 PROTEIN 11 381 - -
Cme10g00828 384 SMART serkin_6 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00828 384 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Cme10g00828 384 MobiDBLite consensus disorder prediction 7 33 - -
Cme10g00828 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cme10g00828 384 Pfam Protein tyrosine and serine/threonine kinase 83 350 IPR001245 GO:0004672|GO:0006468
Cme10g00828 384 SUPERFAMILY Protein kinase-like (PK-like) 66 373 IPR011009 -
Cme10g00828 384 MobiDBLite consensus disorder prediction 362 384 - -
Cme10g00828 384 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
Cme10g00828 384 CDD STKc_IRAK 84 353 - -
Cme10g00828 384 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme10g00828 384 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 11 381 - -
Cme10g00828 384 MobiDBLite consensus disorder prediction 362 377 - -
Cme10g00828 384 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cme10g00828 384 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00702 Cme-Chr6:4544201 Cme10g00828 Cme-Chr10:5472250 0 dispersed
Cme07g00052 Cme-Chr7:319325 Cme10g00828 Cme-Chr10:5472250 2.35E-164 dispersed
Cme10g00828 Cme-Chr10:5472250 Cme11g02350 Cme-Chr11:30503519 0 dispersed
Cme12g00287 Cme-Chr12:3527094 Cme10g00828 Cme-Chr10:5472250 0 transposed
Cme10g00828 Cme-Chr10:5472250 Cme04g02570 Cme-Chr4:31786326 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65207 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00828 - - csv:101221705 740.725