Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00858 ATGGTGGGCTCTGAGGAGGATTCTGGTACTTCTGGGGGTGCAGCGGTGCAGCTCTCTGGCAGTCGGAAATTGTTCTGGCGCTCGGCTTCATGGTCAGCATCACGTTCCTCACTTCACCATCCTGAAGTGAACAGAGAAGGGGGAGACCCCAATGGGAATCTCGGCGATGGTAATGGACCAAGCCGAATTTTTCCTGCTCCTTTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGCTTGCCCCCTTTACAGCCTTTGTCGATTGCTCGGCGAAGCTTGGATGAATGGCCAAAGGCGGGGTCGGATGATATTGGTGAGTGGCCGCAACCTCCTACTCCAAGTGGCAGAGGAAACAACGAGAGGTTGAAACTTGATTTGTCAACAATTCAGAGAATCCCTGATAAGAATTGTGGGTTGGTGAAGAGGGATAAAATTGCTTTCTTTGACAAAGAGTGTTCAAAAGTGGCAGAACATGTATATCTTGGTGGTGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATAACTCATGTATTGAATTGTGTAGGATTCGTTTGCCCAGAGTACTTCAAAGATGATTTTGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTACTTCGAAGATGTTAGAGAACAAAATGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCGACGTCCTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTCGATGACGCATTTCAATATGTTAAGGCAGCAAGAGGTATTGCCGACCCAAATATGGGTTTTGCTTGTCAGTTATTACAGTGTCAAAAGAGGGTCCATGCGTTCCCTCTTAGTCCAAGTTCACTGTTGAGGATGTACAGAATTGCTCCGCACTCACCGTATGATCCCTTGCATTTGGTCCCCAAAATGTTAAATGATCCTTCGCCCTCTGCTCTTGATTCTAGAGGTGCATTTATCATTCATATACCTTCTGCCATATTTGTTTGGCTTGGTAAAAACTGTGAAGCAATTATGGAAAGAGATGCAAGGGGAGCCGTTGTGCAGATTGTTCGGTACGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAGCCAACAAACTTTTGGGATTCTTTTGCGAACCTGTTACCTTTAATGGATAAATCTAACAGTAAAATTAATCTTGGGGAATTAAAAGTTAAGCCTTATCCAGGGGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATTACTGGTGGTTTTGTTCCTCCATTTCCTTCATCGGAGAATGAGCATGAAACCCATCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGACGTAAGTTTGCCTCTGGAAATATGAAAGAGTCTGTATCAGCTCCTCGAGTATCCCTTTCTAGGGTTTATTCAGACTCGTTGATGATGGTGCATTTTTCTGCCAAATCTTCATCACCTTCAGCGTCTTCTCTGTCGTCGTCATCTTCTTCACCTATCTATCTTTCGCCAGACTCCATCTCTTCTGATTCAAGTTCAAGTTCAAGTTCTAGTTCCAAGTATTTTTCAGAATCCTCTTTAGATTCTCCATCTGCTTCTTCACCTTCAGTTTCAGTTTCCTCACTGTCCAGTTTCTCTAACATGTCTCTTGTCTCATCCAATAGTTCCTCAGAACACATGCCCAATGTTCCAGAAACTCGTGATACAGTCCCTTTGGAATCAAGTTCTCGTTCATTTTCATTCCCGTCGAAAAAGTTCTCACCTTCTCTCGCAGAACGTCGTGGTACTGCAAAATCTCTGACATTGCCTACAATGCCTAGTAAAATCAAAGCAACAAATAGTGCCTCAAGGTTTCTCGCTACTCAAGAAGAAGTTAAGAGGAAAAACAAGACTTCTTACCCTCTTAATGTATCGATTAATATGAAAAATGGCTCAGACTCTATGGATAGGATTGAAAATGAACAAACAAGTTCCACTCAGAATTTCAAGAATATTGGAAATAGAATGGAAATAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGCTGGACAATCTGCTGGTTCATGGAAAAGCTATCCCAAACTTTTTGAAGAAGGCATGGTGTCCACTTTGTCTAATGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAGTTAGAAAAGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTGTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTATATTTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCATGTAAAGAGGGATAAGGATAAAGAGTTGGTTGATATAGAAAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACGGAAATAGATCTGCCAGAAAATACAGAAATTAAGGATGTTTCAAAATTTATGGCTGAGTAA 2538 42.16 MVGSEEDSGTSGGAAVQLSGSRKLFWRSASWSASRSSLHHPEVNREGGDPNGNLGDGNGPSRIFPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNNERLKLDLSTIQRIPDKNCGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWLGKNCEAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPTNFWDSFANLLPLMDKSNSKINLGELKVKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESSWSVLRRKFASGNMKESVSAPRVSLSRVYSDSLMMVHFSAKSSSPSASSLSSSSSSPIYLSPDSISSDSSSSSSSSSKYFSESSLDSPSASSPSVSVSSLSSFSNMSLVSSNSSSEHMPNVPETRDTVPLESSSRSFSFPSKKFSPSLAERRGTAKSLTLPTMPSKIKATNSASRFLATQEEVKRKNKTSYPLNVSINMKNGSDSMDRIENEQTSSTQNFKNIGNRMEIRVGSVASCQQETKVAGQSAGSWKSYPKLFEEGMVSTLSNGKQDGEFVQPMVYCWPELEKIAAFDTSYLNSKAAVVIFSPSRYLGKKDDMMLYIWVGSSFDHDLSQVHVKRDKDKELVDIEKIDWVKVGQYVLTEIDLPENTEIKDVSKFMAE 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5788233 5793179 + MELO3C023830.2.1 Cme10g00858 339744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00858 845 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Cme10g00858 845 MobiDBLite consensus disorder prediction 32 80 - -
Cme10g00858 845 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Cme10g00858 845 Gene3D Protein tyrosine phosphatase superfamily 141 295 IPR029021 -
Cme10g00858 845 MobiDBLite consensus disorder prediction 100 121 - -
Cme10g00858 845 SMART VILL_6 305 399 IPR007122 GO:0051015
Cme10g00858 845 Gene3D Severin 304 399 IPR029006 -
Cme10g00858 845 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 840 - -
Cme10g00858 845 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Cme10g00858 845 MobiDBLite consensus disorder prediction 525 556 - -
Cme10g00858 845 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Cme10g00858 845 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Cme10g00858 845 MobiDBLite consensus disorder prediction 572 607 - -
Cme10g00858 845 PANTHER MKPA PROTEIN 1 840 - -
Cme10g00858 845 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Cme10g00858 845 CDD DSP 154 288 - -
Cme10g00858 845 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Cme10g00858 845 MobiDBLite consensus disorder prediction 572 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00586 Cme-Chr10:3766383 Cme10g00858 Cme-Chr10:5788233 0 dispersed
Cme10g00858 Cme-Chr10:5788233 Cme11g01934 Cme-Chr11:27371643 9.39E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00858 - - cmo:103500189 1528.84