Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00877 ATGGAGGGTTTTGTGAGGTTTTTGGTTTTGGCAAAGCCATATTTTGGAGTTCTTTTTATGCAACTGGGTTCGGCTGGAATGGCGATTATTGCAAAGTTTGCTTTGAACAAAGGGATGAGCCAATATGTTTTTGTGTTTTATCGTATGATTATTGCAACCCTTATCATGGCTCCTTTTGCCATCATCTTTGAAAGAAAAGTGAGGACGAAGATGACGATTTCGTTGGTCTTCAAGATTGTAATGCTCGGTCTACTAGAGCCAGTGATTGATCTCAACTTATACTTTACTGGTATGAAGTACACAACAGCAACCTTTGCAGTTGCGATGTGCAATGTTCTACCAGCTTTTGCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAATATTCGGAAAAGAGGAAGCCAAGCAAAAATAGTAGGAACCATAGTAACAGTAGGAGGAGCCATGATTATGACATTCATAAGAGGACCCATGTTGAATCTGCCATGGACAAAACCCAACCATCCCTCTTCTTCTTCATCATCTTCTTCAAAAAATCACCAAGACCAAATCAAGGGCTCCCTCATGATTGCAATTGGCTGCATTTGCCAGTCAGCTTTCATCATTCTTCAGGCAATTACATTGAAATTGTACCCGGCGGAGCTATCTCTTACAGCATTGATATGTTTAGTGGCAACCGTTGGAGGCTGTTTGGTGGCTTTGGTCATGGAGAGAGGGAACCCTTCTGCTTGGGCTTTGCACTTTGATAGCCAGCTTCTATCTGTGGTTTATGCTGGAGTAATTTGTTCAGGGGTAACGTATTACATTCAAGGAATGGTGATGCAAATAAAAGGGCCTGTTTTTGTCACTGCATTCAATCCTCTATCCATGATTTTTGTTGCAATCATGAGCTCCTTCATCTTATCTGAGATTATGTTGTTGGGAAGGATTGTTGGAGCAGTGACCATTATCACTGGGTTGTACCTGGTTTTGTGGGGCAAAAGAAAAGATCGGCTTTTAGTTAAATCGGACTCTGATAGTAAGCAACAAATGACTGAAACAGATGAGACTTCGAAGAAGACGGTTCAACCGAGTCAAGAATTCATCTCACTTGATGTTACCAGAGAGGAGACAAAATGA 1125 41.69 MEGFVRFLVLAKPYFGVLFMQLGSAGMAIIAKFALNKGMSQYVFVFYRMIIATLIMAPFAIIFERKVRTKMTISLVFKIVMLGLLEPVIDLNLYFTGMKYTTATFAVAMCNVLPAFAFLMAWACRLEKVNIRKRGSQAKIVGTIVTVGGAMIMTFIRGPMLNLPWTKPNHPSSSSSSSSKNHQDQIKGSLMIAIGCICQSAFIILQAITLKLYPAELSLTALICLVATVGGCLVALVMERGNPSAWALHFDSQLLSVVYAGVICSGVTYYIQGMVMQIKGPVFVTAFNPLSMIFVAIMSSFILSEIMLLGRIVGAVTIITGLYLVLWGKRKDRLLVKSDSDSKQQMTETDETSKKTVQPSQEFISLDVTREETK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6138411 6144067 - MELO3C023842.2.1 Cme10g00877 339763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00877 374 PANTHER WAT1-RELATED PROTEIN 9 343 - -
Cme10g00877 374 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Cme10g00877 374 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020|GO:0016021
Cme10g00877 374 MobiDBLite consensus disorder prediction 338 360 - -
Cme10g00877 374 PANTHER WAT1-RELATED PROTEIN 9 343 IPR030184 GO:0016021|GO:0022857
Cme10g00877 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cme10g00877 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 236 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00556 Cme-Chr9:5743344 Cme10g00877 Cme-Chr10:6138411 1.04E-108 dispersed
Cme09g00562 Cme-Chr9:5792882 Cme10g00877 Cme-Chr10:6138411 4.89E-145 dispersed
Cme10g00733 Cme-Chr10:4653085 Cme10g00877 Cme-Chr10:6138411 6.53E-107 dispersed
Cme10g00877 Cme-Chr10:6138411 Cme10g00878 Cme-Chr10:6168596 0 tandem
Cme03g00317 Cme-Chr3:4019876 Cme10g00877 Cme-Chr10:6138411 1.96E-74 transposed
Cme11g00909 Cme-Chr11:12552000 Cme10g00877 Cme-Chr10:6138411 7.55E-08 transposed
Cme10g00877 Cme-Chr10:6138411 Cme08g02377 Cme-Chr8:30644568 1.05E-135 wgd
Cme10g00877 Cme-Chr10:6138411 Cme09g00551 Cme-Chr9:5602356 1.46E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00877 - - csv:101206072 684.871