Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00878 ATGGAGTCTTTTGTAAGGTTTATGCGTTCTGCAAAGCCGTATTTCGGAGTGATTTTCGTGCAATTTGGTTACGCTGGAATGACGATTCTTACGAAATCAGCTTTGGATAAAGGAATGAGCCAACATGTTTTTGTGGCTTATCGTCAAGTTGCTGCTACTCTTGTCATTGCTCCTTTCGCCATTATCTTTGAAAGGTTGAGTGTTTTTGGTGTTTTTGCATGCAGGAAGGCAAGGACAAAGATGACCTTTTCATTGTTGTTCAAAATTTTGTTGCTGGGATTCTTAGAGCCAGTGATTGATCAAAACTTGTTCTATACGGGTATGAAGTATACAACAGCAACCTTTGCAGCTGCCATGTGCAATGTTTTGCCAGCTTTTGTTTTCCTCATGGCTTGGGCTTGCAGGCTCGAGAAAGTGAATATTATGAAAAGGGGAAGCCAAGCAAAAATCTTAGGAACAATAGTAACAGTAGGAGGAGCCATGATTATGACATTCATAAAAGGTCCAATGTTGCATCTACCATGGTCGAAACTACCAAATCACCCCTCAGCTTCTTCTTCTTCATCATCAGCTGCTTCTACAGATCACCAAAATCAAATCATTGGCTTCCTCATGCTTACAACTGGCTGCATTTGTTGGGCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGAGTACCCTGCCGAACTCTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAGGTTCTGGGGTGGCTTTGGTCATTGAGAGAGGGAACCCTTCTGCTTGGGCTTTGCACTTTGATAGACAGCTTCTAGCTGTGGTTTATTCTGGAGTAATATGTTCAGGGGTAACGTATTATATTCAAGGAGTGGTAATGCAAACAAAAGGGCCAGTTTTTTTCTCTGCATTCAATCCTCTAGCCATGGTTCTTGTTGCAATCATGAGCTTCTTCATCTTGTCTGAGATTATGTTTTTGGGAAGGATGATTGGAGTAGTGATCATAATATGTGGCTTGTACATGGTTTTATGGGGGAAAACCCGAGATCAACCTCCAGTTCTTAAATCTGAATGCGATAAAATAACACCTTGTGAGCAACAAATGAAGACGACAACAACGGTTCAATCGAGTCAAGATTTTCTCGCACTCGATGTTGCAAAAGAGGAGAAAAATTAA 1167 41.65 MESFVRFMRSAKPYFGVIFVQFGYAGMTILTKSALDKGMSQHVFVAYRQVAATLVIAPFAIIFERLSVFGVFACRKARTKMTFSLLFKILLLGFLEPVIDQNLFYTGMKYTTATFAAAMCNVLPAFVFLMAWACRLEKVNIMKRGSQAKILGTIVTVGGAMIMTFIKGPMLHLPWSKLPNHPSASSSSSSAASTDHQNQIIGFLMLTTGCICWAAFITLQAITLKEYPAELSLTALICLVGTIGGSGVALVIERGNPSAWALHFDRQLLAVVYSGVICSGVTYYIQGVVMQTKGPVFFSAFNPLAMVLVAIMSFFILSEIMFLGRMIGVVIIICGLYMVLWGKTRDQPPVLKSECDKITPCEQQMKTTTTVQSSQDFLALDVAKEEKN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6168596 6173612 - MELO3C023843.2.1 Cme10g00878 339764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00878 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 165 - -
Cme10g00878 388 PANTHER WAT1-RELATED PROTEIN 9 352 IPR030184 GO:0016021|GO:0022857
Cme10g00878 388 Pfam EamA-like transporter family 201 340 IPR000620 GO:0016020|GO:0016021
Cme10g00878 388 Pfam EamA-like transporter family 13 163 IPR000620 GO:0016020|GO:0016021
Cme10g00878 388 PANTHER WAT1-RELATED PROTEIN 9 352 - -
Cme10g00878 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 261 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02562 Cme-Chr6:32625362 Cme10g00878 Cme-Chr10:6168596 3.37E-39 dispersed
Cme08g02377 Cme-Chr8:30644568 Cme10g00878 Cme-Chr10:6168596 3.08E-126 dispersed
Cme09g01613 Cme-Chr9:20909807 Cme10g00878 Cme-Chr10:6168596 2.00E-41 dispersed
Cme10g00877 Cme-Chr10:6138411 Cme10g00878 Cme-Chr10:6168596 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00878 - - csv:101222086 674.47