Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00889 ATTTCTGAGCAAGTCTCTCCCATTGATGTGATTCTCCACCATCAACGAACTTTTGCACAAAAGAGAAAGCTCTTCACAAGAATTATAACAAATACTATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCATCAAACGGGAGGAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCGCCACCTGGGGGTGGGGGAGGTGGTGAGAGTGCTGGTGGTGGTAGTACTGGGTCGATTAGGCCGATTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACCAAATCTCGGAATCGGTCGAAGTCTCCGGCAGCCAGCGAACGACAATTATTAGTTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTGTCTTCTTTACAAAATTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCGCCTCAAGCTCCTCCAACGAGCGGTGGCTCTGCTGCCGGAGGAGTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAACGATCAACAACCTAATTTGCTTTACACTTTCGAACCACCTGAAGGCGCCATGACTCGGTATAACCTTGGCGGATTCTCGAGATTAGGAATTGAAAACGACATTGGAATGTCAATGGAGGGTGAGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGCGGTGGTAGCGAACTTCATGGCTTCTCCTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 1068 47.66 ISEQVSPIDVILHHQRTFAQKRKLFTRIITNTMVFPPLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGESAGGGSTGSIRPISMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLVGSTNSTAAVSLSTQPHLPFLSSLQNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQQPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGMSMEGEAVKVEESKGMNLGKNFQFWVGGGGGNDVNAWSGGGSGGSELHGFSSSSASHLLRQ 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6268570 6270066 - MELO3C023853.2.1 Cme10g00889 339775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00889 355 Pfam Dof domain, zinc finger 111 165 IPR003851 GO:0003677|GO:0006355
Cme10g00889 355 ProSiteProfiles Zinc finger Dof-type profile. 111 165 IPR003851 GO:0003677|GO:0006355
Cme10g00889 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 332 IPR045174 GO:0003700|GO:0006355
Cme10g00889 355 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 38 332 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 45 92 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 45 62 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 155 181 - -
Cme10g00889 355 ProSitePatterns Zinc finger Dof-type signature. 113 149 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00289 Cme-Chr8:1854700 Cme10g00889 Cme-Chr10:6268570 1.20E-35 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme12g00200 Cme-Chr12:2069742 5.59E-62 dispersed
Cme08g00542 Cme-Chr8:3407578 Cme10g00889 Cme-Chr10:6268570 4.88E-32 transposed
Cme09g00505 Cme-Chr9:4859893 Cme10g00889 Cme-Chr10:6268570 1.98E-57 transposed
Cme10g00889 Cme-Chr10:6268570 Cme04g02612 Cme-Chr4:32047295 1.21E-55 wgd
Cme10g00889 Cme-Chr10:6268570 Cme08g02396 Cme-Chr8:30824290 1.34E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42089 PF02701 zf-Dof 5.10E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00889 - - csv:101220381 563.918