Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00889 ATTTCTGAGCAAGTCTCTCCCATTGATGTGATTCTCCACCATCAACGAACTTTTGCACAAAAGAGAAAGCTCTTCACAAGAATTATAACAAATACTATGGTTTTTCCTCCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCATCAAACGGGAGGAAATGACACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCGCCACCTGGGGGTGGGGGAGGTGGTGAGAGTGCTGGTGGTGGTAGTACTGGGTCGATTAGGCCGATTTCGATGACTGATCGGGCTCGGTTGGCAAAGATTCCGCAGCCAGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGTCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGCGGTGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCCGTAGGAACAAGAGAACCAAATCTCGGAATCGGTCGAAGTCTCCGGCAGCCAGCGAACGACAATTATTAGTTGGATCAACTAATTCCACTGCTGCAGTTTCACTTTCAACACAACCCCATTTGCCGTTTTTGTCTTCTTTACAAAATTTCTCTACTTACGGCCTCAATTTGGGGATAATTCCGCCTCAAGCTCCTCCAACGAGCGGTGGCTCTGCTGCCGGAGGAGTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTGGCTAACGATCAACAACCTAATTTGCTTTACACTTTCGAACCACCTGAAGGCGCCATGACTCGGTATAACCTTGGCGGATTCTCGAGATTAGGAATTGAAAACGACATTGGAATGTCAATGGAGGGTGAGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTGGGGAAGAATTTTCAGTTTTGGGTTGGTGGCGGTGGCGGAAACGATGTAAATGCATGGAGTGGCGGCGGCAGCGGTGGTAGCGAACTTCATGGCTTCTCCTCATCCTCCGCCAGCCACTTATTGAGACAGTAA 1068 47.66 ISEQVSPIDVILHHQRTFAQKRKLFTRIITNTMVFPPLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGGESAGGGSTGSIRPISMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPAASERQLLVGSTNSTAAVSLSTQPHLPFLSSLQNFSTYGLNLGIIPPQAPPTSGGSAAGGVDVHEFQGDHWRLQQPQQFPLLANDQQPNLLYTFEPPEGAMTRYNLGGFSRLGIENDIGMSMEGEAVKVEESKGMNLGKNFQFWVGGGGGNDVNAWSGGGSGGSELHGFSSSSASHLLRQ 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6268570 6270066 - MELO3C023853.2.1 Cme10g00889 339775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00889 355 Pfam Dof domain, zinc finger 111 165 IPR003851 GO:0003677|GO:0006355
Cme10g00889 355 ProSiteProfiles Zinc finger Dof-type profile. 111 165 IPR003851 GO:0003677|GO:0006355
Cme10g00889 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 332 IPR045174 GO:0003700|GO:0006355
Cme10g00889 355 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 38 332 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 45 92 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 45 62 - -
Cme10g00889 355 MobiDBLite consensus disorder prediction 155 181 - -
Cme10g00889 355 ProSitePatterns Zinc finger Dof-type signature. 113 149 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00889 - - - csv:101220381 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00289 Cme-Chr8:1854700 Cme10g00889 Cme-Chr10:6268570 1.20E-35 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme12g00200 Cme-Chr12:2069742 5.59E-62 dispersed
Cme08g00542 Cme-Chr8:3407578 Cme10g00889 Cme-Chr10:6268570 4.88E-32 transposed
Cme09g00505 Cme-Chr9:4859893 Cme10g00889 Cme-Chr10:6268570 1.98E-57 transposed
Cme10g00889 Cme-Chr10:6268570 Cme04g02612 Cme-Chr4:32047295 1.21E-55 wgd
Cme10g00889 Cme-Chr10:6268570 Cme08g02396 Cme-Chr8:30824290 1.34E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT1G29160 55.6 3.7e-44 174.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 1.2e-39 159.8
Cme09g01866 . 56 151 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.4e-42 168.7
Cme12g01293 CCT 14 178 C2C2-Dof Transcription Factor Family AT2G34140 54.3 1.2e-42 169.9
Cme08g00224 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 50.9 7.8e-39 157.1
Cme04g02612 CCT,ECH 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.6e-40 163.7
Cme10g00889 . 33 163 C2C2-Dof Transcription Factor Family AT2G37590 62.4 9.8e-38 154.5
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT2G37590 64.0 2.2e-37 153.3
Cme12g00200 CCT,ECH 66 140 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Cme09g01866 . 56 149 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.3e-44 174.9
Cme04g01994 . 136 514 C2C2-Dof Transcription Factor Family AT5G39660 51.4 1.5e-81 300.4
Cme12g00200 CCT,ECH 1 140 C2C2-Dof Transcription Factor Family AT5G02460 56.5 1.4e-38 157.5
Cme08g02396 CCT,ECH 43 123 C2C2-Dof Transcription Factor Family AT5G02460 82.7 2.0e-37 153.7
Cme09g00505 . 35 169 C2C2-Dof Transcription Factor Family AT5G02460 62.1 4.5e-37 152.5
Cme04g02612 CCT,ECH 54 137 C2C2-Dof Transcription Factor Family AT3G55370 78.6 4.2e-37 152.5
Cme02g01804 CCT 28 335 C2C2-Dof Transcription Factor Family AT5G60850 50.5 7.0e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42089 PF02701 zf-Dof 5.10E-32 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme10g00889 Cme_Chr10 FPKM 37.840466 37.193104 28.712046 25.396057 19.759657 22.043242 22.088835 32.445259 37.441067 45.295532