Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00899 ATGCCTCCTCCTCCCCTTCTTCCTCTTACTCTTCTCCCCATTCTCCTCTCTCTTCTCACCGTTCACGCTCGGATCCCCGGAGTTTACTCCGGTGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACTATGGGAGGAGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGCTAAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAACTTAAGTGCGCTAACGATCCGCAGTGGTGCCATTCCGGGAGTCCGTCGATTTTCATAACAGCCACAAACTTTTGCCCTCCGAACTACGCTCTTCCAAGTGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCACTTCGACCTCGCCATGCCAATGTTTCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCCGTCTCTTACCGCAGGGTACCATGCCGGAAGAAAGGAGGAATAAGATTCACAATCAACGGCTTCCGATACTTCAACTTGATACTAATAACAAACGTGGCAGGAGCAGGGGACATCGTGAAAGCAAGCGTAAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCAGAAATTGGGGTCAAAACTGGCAATCAAACGCCATTTTGGTAGGTCAGTCACTTTCTTTTAGGGTAACATCCAGTGACCGTCGCACTTCCACTTCTTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAAACTTTCACCGGCAAGAACTTCAGAGTCTAA 783 51.98 MPPPPLLPLTLLPILLSLLTVHARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLILITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAILVGQSLSFRVTSSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6397055 6400049 - MELO3C023866.2.1 Cme10g00899 339785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00899 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Cme10g00899 260 PANTHER EXPANSIN-A4 14 259 - -
Cme10g00899 260 Gene3D - 166 258 IPR036749 -
Cme10g00899 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Cme10g00899 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Cme10g00899 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Cme10g00899 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Cme10g00899 260 Gene3D - 22 162 IPR036908 -
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Cme10g00899 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Cme10g00899 260 PANTHER EXPANSIN-A15 14 259 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Cme10g00899 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Cme10g00899 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Cme10g00899 260 SMART dpbb_1 69 156 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01912 Cme-Chr1:27548723 Cme10g00899 Cme-Chr10:6397055 1.33E-89 dispersed
Cme09g00465 Cme-Chr9:4473432 Cme10g00899 Cme-Chr10:6397055 3.59E-152 dispersed
Cme10g00403 Cme-Chr10:2578552 Cme10g00899 Cme-Chr10:6397055 7.66E-126 dispersed
Cme10g00899 Cme-Chr10:6397055 Cme11g01314 Cme-Chr11:19942997 7.15E-168 dispersed
Cme10g00899 Cme-Chr10:6397055 Cme12g00171 Cme-Chr12:1665953 4.93E-131 wgd
Cme10g00899 Cme-Chr10:6397055 Cme08g02411 Cme-Chr8:30997262 2.55E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00899 - - csv:101218950 517.309