Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme10g00914 ATGACAGGCCTCAACTCTTCTACTACTTCTTCTTCTTGTGGTGCTTGCAAGTTTCTTAGGAGAAAATGTAGTGATCAATGTGTTTTTGCTCCTTTCTTTAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCTAAACTTCTCTTACACCTCCCCACACATACCCGAAGCCACGCTGCCATTACCGTCGCTTACGAAGCGCTTGAACGCATGCGCGATCCTACCTATGGTTGCATTGCACATATCTTTGCATTGCAACAAGAGGTTGTGAGCTTGCAAGAGGAGATAGAAATTCTAGGGAGTCAAATTGCGAATCTTGCCACAACCGGTGGGAGCATTGCAGCGGTCGAGAATCCATTTATAGATCAGGTAGTTCAAGTGTCACAGCAGATGGATGGTTTCGAGATGACGAACACAAATTATTATCAAAATGAGCTAGCTTCTGAGTTGCCCTACCAAAGTTTTGATAACATCCAAAATGATAATACTGCTCAAATGATATCTCCATTGTTTTGTTTAGGGGAAGAAGATGGGGTTTTTGAGTTTTGTAACTCAAATAATGTTGTTGAGAGTACCTCAGCCTTTGATGTTTCAGTTGAGGAGAATTGTGTTGGTTATCCATGGATAGTTGGATGA 666 41.59 MTGLNSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISPLFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6680852 6682025 + MELO3C023880.2.1 Cme10g00914 339800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme10g00914 221 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Cme10g00914 221 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Cme10g00914 221 Coils Coil 92 112 - -
Cme10g00914 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 203 - -
Cme10g00914 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00914 Cme-Chr10:6680852 Cme11g02516 Cme-Chr11:31667442 2.73E-38 dispersed
Cme10g00914 Cme-Chr10:6680852 Cme06g00253 Cme-Chr6:1538026 4.55E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42090 PF03195 LOB 4.10E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme10g00914 K13945 - csv:101204875 406.757